ssadedin / bazamLinks
A read extraction and realignment tool for next generation sequencing data
☆104Updated 3 years ago
Alternatives and similar repositories for bazam
Users that are interested in bazam are comparing it to the libraries listed below
Sorting:
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- BigWig and BAM utilities☆100Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Structural Variant Index☆75Updated last year
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- BAM Statistics, Feature Counting and Annotation☆152Updated this week
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- Read visualizer for structural variants☆84Updated 7 years ago
- ☆78Updated 11 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆110Updated 3 months ago
- Toolkit for processing TAB-delimited format☆62Updated last year
- ☆49Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago