ssadedin / bazam
A read extraction and realignment tool for next generation sequencing data
☆99Updated 2 years ago
Alternatives and similar repositories for bazam:
Users that are interested in bazam are comparing it to the libraries listed below
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- Structural Variant Index☆71Updated 2 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- An awk-like VCF parser☆56Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- ☆39Updated 9 months ago
- BigWig and BAM utilities☆93Updated 10 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ☆78Updated 10 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- Concordance and contamination estimator for tumor–normal pairs☆57Updated 3 months ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Thousand Variant Callers Project Repository☆71Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Tip and tricks for BAM files☆84Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- TIDDIT - structural variant calling☆73Updated 3 weeks ago
- LoFreq Star: Sensitive variant calling from sequencing data☆103Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago