ssadedin / bazam
A read extraction and realignment tool for next generation sequencing data
☆99Updated 2 years ago
Alternatives and similar repositories for bazam:
Users that are interested in bazam are comparing it to the libraries listed below
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 7 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- BigWig and BAM utilities☆92Updated 9 months ago
- ☆78Updated 10 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆102Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Powerful statistics for VCF files☆67Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- Same species annotation lift over pipeline.☆96Updated last year
- R package designed to simplify structural variant analysis☆71Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆44Updated 3 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Structural Variant Index☆70Updated last month
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ☆39Updated 8 months ago
- A collection of command line tools for working with sequencing data☆51Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 2 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆69Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- ☆79Updated 8 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago