ssadedin / bazamLinks
A read extraction and realignment tool for next generation sequencing data
☆103Updated 2 years ago
Alternatives and similar repositories for bazam
Users that are interested in bazam are comparing it to the libraries listed below
Sorting:
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated last week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- BigWig and BAM utilities☆97Updated last year
- An awk-like VCF parser☆56Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Toolkit for processing TAB-delimited format☆62Updated 10 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆128Updated 2 years ago
- Powerful statistics for VCF files☆70Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- A collection of command line tools for working with sequencing data☆51Updated last week
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated 2 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Structural Variant Index☆75Updated 8 months ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago