ssadedin / bazamLinks
A read extraction and realignment tool for next generation sequencing data
☆103Updated 2 years ago
Alternatives and similar repositories for bazam
Users that are interested in bazam are comparing it to the libraries listed below
Sorting:
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago
- An awk-like VCF parser☆56Updated last year
- BigWig and BAM utilities☆97Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- ☆78Updated 11 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated 2 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆71Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Relevant papers for CNV and SV approaches☆94Updated 10 months ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 10 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- Toolkit for processing TAB-delimited format☆62Updated 11 months ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- ☆54Updated 5 years ago