MG-RAST / AWE
workflow and resource management system for bioinformatics data analysis
☆69Updated 4 years ago
Alternatives and similar repositories for AWE:
Users that are interested in AWE are comparing it to the libraries listed below
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 5 years ago
- An object store for scientific data☆51Updated 4 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Bioinformatic infrastructure libraries☆78Updated 4 years ago
- BigDataScript: Scirpting language for big data☆92Updated 3 years ago
- example applications built using bíogo☆18Updated 3 years ago
- Write-once-read-many table for large datasets.☆28Updated last year
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Deprecated☆100Updated 5 years ago
- High performance Workflow Runner☆30Updated this week
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 3 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆15Updated 8 years ago
- Yet Another CWL Engine by Golang☆18Updated 5 years ago
- ☆11Updated 8 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Updated 9 years ago
- Graph Integration Platform☆25Updated 2 weeks ago
- Go / Golang Bioinformatics Library☆45Updated 4 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- FUSE filesystem for the DNAnexus storage system☆14Updated last month
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Minimal docker image for bwa. Not developed any more.☆11Updated 9 years ago
- [Bio in Docker] Symposium 2015☆21Updated 7 years ago
- Funnel is a toolkit for distributed task execution via a simple, standard API.☆124Updated this week
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources☆30Updated 6 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- biogo high throughput sequencing repository☆126Updated 10 months ago
- Go implementation of ntHash☆20Updated 3 years ago