MG-RAST / AWELinks
workflow and resource management system for bioinformatics data analysis
☆70Updated 5 years ago
Alternatives and similar repositories for AWE
Users that are interested in AWE are comparing it to the libraries listed below
Sorting:
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- An object store for scientific data☆52Updated 8 months ago
- Deprecated☆101Updated 6 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 6 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Updated 9 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- Funnel is a toolkit for distributed task execution via a simple, standard API.☆134Updated last week
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago
- Reference server implementation for the GA4GH HTSget API standard.☆12Updated 2 years ago
- Minimal docker image for bwa. Not developed any more.☆11Updated 10 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 10 years ago
- Go / Golang Bioinformatics Library☆45Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- example applications built using bíogo☆18Updated 4 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Updated 9 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- APIs for discovering genomics tools, their metadata and their containers☆33Updated 3 weeks ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year