workflow and resource management system for bioinformatics data analysis
☆70Oct 29, 2020Updated 5 years ago
Alternatives and similar repositories for AWE
Users that are interested in AWE are comparing it to the libraries listed below
Sorting:
- An object store for scientific data☆52Updated this week
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 6 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 8 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 7 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- A Jupyter-based Interactive Visualization Tool for Astronomical Catalogs☆13Feb 9, 2024Updated 2 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆30Jun 9, 2020Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Mar 19, 2019Updated 6 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- A workflow management system and web-based cluster front-end for high performance computing☆20Jun 23, 2022Updated 3 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆38Feb 5, 2026Updated 3 weeks ago
- ☆93Dec 2, 2025Updated 2 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 4 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- (Clojure-like) Lazy iterators in Python☆24Jul 21, 2025Updated 7 months ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- ☆11Dec 17, 2025Updated 2 months ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Jul 21, 2022Updated 3 years ago
- High-reproducibility CWL runner powered by Guix☆21Jan 28, 2026Updated 3 weeks ago