biogo high throughput sequencing repository
☆133Aug 28, 2025Updated last year
Alternatives and similar repositories for hts
Users that are interested in hts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- biogo is a bioinformatics library for Go☆409Mar 28, 2024Updated 2 years ago
- a golang library to read, write and manipulate files in the variant call format.☆73Sep 2, 2025Updated last year
- A lightweight and high-performance bioinformatics package in Golang☆97Updated this week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 11 months ago
- Go / Golang Bioinformatics Library☆46Oct 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 5 years ago
- elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.☆295Jun 2, 2023Updated 3 years ago
- Variant Call Format parser library for Go☆25Aug 11, 2017Updated 9 years ago
- Golang for Bioinformatics☆32Aug 16, 2016Updated 10 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆372Aug 17, 2026Updated 2 weeks ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 2 months ago
- Bioinformatic infrastructure libraries☆79Aug 18, 2020Updated 6 years ago
- bíogo data store repository☆39Nov 20, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- tabix file access with golang using biogo machinery☆10Jul 1, 2025Updated last year
- bíogo ncbi utilities repository☆21Jun 27, 2021Updated 5 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Burrows-Wheeler Transform and FM-index in golang☆21Apr 7, 2023Updated 3 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- C library for high-throughput sequencing data formats☆947Aug 27, 2026Updated last week
- cython + htslib == fast VCF and BCF processing☆447Jun 25, 2026Updated 2 months ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 10 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- C++ API & command-line toolkit for working with BAM data☆432May 18, 2025Updated last year
- Processing and analysis of data coming from Illumina sequencing machines☆11Aug 20, 2026Updated 2 weeks ago
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆27Sep 22, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools for working with SAM/BAM data☆614Dec 22, 2024Updated last year
- Collection of statistical routines in golang☆31Jan 19, 2018Updated 8 years ago
- Extensible quality control dashboard built around FASTQ assessment.☆15May 17, 2019Updated 7 years ago
- nim wrapper for htslib for parsing genomics data files☆159May 2, 2026Updated 4 months ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Jul 10, 2017Updated 9 years ago