biogo / htsLinks
biogo high throughput sequencing repository
☆132Updated 2 months ago
Alternatives and similar repositories for hts
Users that are interested in hts are comparing it to the libraries listed below
Sorting:
- A lightweight and high-performance bioinformatics package in Golang☆95Updated 3 weeks ago
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- a golang library to read, write and manipulate files in the variant call format.☆72Updated 2 months ago
- Go / Golang Bioinformatics Library☆45Updated last year
- A collection of genomics software tools written in Go (golang).☆86Updated last week
- biogo is a bioinformatics library for Go☆403Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆224Updated 2 months ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆195Updated last year
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.☆291Updated 2 years ago
- Burrows-Wheeler Transform and FM-index in golang☆20Updated 2 years ago
- Interval data structure☆235Updated 11 months ago
- Golang for Bioinformatics☆31Updated 9 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 6 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Language and framework for high performance computational pipelines.☆158Updated 4 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆101Updated 2 years ago
- High performance Workflow Runner☆30Updated 3 months ago
- workflow and resource management system for bioinformatics data analysis☆69Updated 5 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- Funnel is a toolkit for distributed task execution via a simple, standard API.☆133Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆260Updated last year
- MIcrobiomes using Compressive Acceleration☆17Updated 7 years ago
- ☆82Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 8 months ago
- genetic variant expressions, annotation, and filtering for great good.☆267Updated last month
- Graph realignment tools for structural variants☆164Updated 2 years ago
- example applications built using bíogo☆18Updated 4 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆92Updated last month