vanheeringen-lab / genomepyLinks
genes and genomes at your fingertips
☆400Updated last week
Alternatives and similar repositories for genomepy
Users that are interested in genomepy are comparing it to the libraries listed below
Sorting:
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated this week
- Performant Pythonic GenomicRanges☆489Updated 2 weeks ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆341Updated last week
- A tool to find sequencing data and metadata from public databases.☆585Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆438Updated 9 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆382Updated 3 months ago
- RNA-seq workflow using STAR and DESeq2☆346Updated 3 weeks ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆843Updated last year
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆326Updated 6 months ago
- GFF and GTF file manipulation and interconversion☆308Updated last year
- Tool for plotting sequencing data along genomic coordinates.☆319Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆552Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆247Updated 5 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆239Updated last week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆165Updated 4 months ago
- Efficient pythonic random access to fasta subsequences☆479Updated last month
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆379Updated last week
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆345Updated 9 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆255Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆344Updated 3 months ago
- Bioinformatics Workbook repository☆193Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆522Updated 2 months ago
- Nextflow training material☆196Updated this week
- minimal example implementations for bioinformatics workflow managers☆279Updated 3 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆531Updated 2 weeks ago