vanheeringen-lab / genomepy
genes and genomes at your fingertips
☆375Updated last week
Related projects: ⓘ
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆367Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆307Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆755Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆541Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆379Updated last week
- Transcript assembly and quantification for RNA-Seq☆365Updated this week
- parallel fastq-dump wrapper☆270Updated last year
- Fast genome-wide functional annotation through orthology assignment☆557Updated 4 months ago
- Plot structural variant signals from many BAMs and CRAMs☆512Updated 2 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆368Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆257Updated 11 months ago
- Bioinformatics Workbook repository☆171Updated 5 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆364Updated 9 months ago
- RNA-seq workflow using STAR and DESeq2☆321Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆198Updated 3 weeks ago
- Performant Pythonic GenomicRanges☆436Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆389Updated this week
- Gene cluster comparison figure generator☆517Updated 3 months ago
- Another Gtf/Gff Analysis Toolkit☆445Updated this week
- A curated list of bioinformatics bench-marking papers and resources.☆310Updated last month
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆156Updated 7 months ago
- TransDecoder source☆267Updated 5 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆196Updated this week
- Eukaryotic Genome Annotation Pipeline☆317Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆257Updated 3 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆383Updated 5 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆379Updated 2 weeks ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆345Updated last week
- Tools to process and analyze deep sequencing data.☆670Updated 2 weeks ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆231Updated 2 months ago