vanheeringen-lab / genomepyLinks
genes and genomes at your fingertips
☆405Updated 3 months ago
Alternatives and similar repositories for genomepy
Users that are interested in genomepy are comparing it to the libraries listed below
Sorting:
- Performant Pythonic GenomicRanges☆492Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated 3 weeks ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆349Updated last month
- A tool to find sequencing data and metadata from public databases.☆593Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- RNA-seq workflow using STAR and DESeq2☆351Updated 3 weeks ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 6 months ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆860Updated last year
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆396Updated 2 months ago
- Efficient pythonic random access to fasta subsequences☆478Updated 4 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Tool for plotting sequencing data along genomic coordinates.☆335Updated 3 weeks ago
- parallel fastq-dump wrapper☆301Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆361Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆290Updated 2 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆440Updated 5 months ago
- minimal example implementations for bioinformatics workflow managers☆280Updated 4 years ago
- GFF and GTF file manipulation and interconversion☆312Updated last year
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆289Updated last year
- Bioinformatics Workbook repository☆199Updated 3 weeks ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆328Updated 9 months ago
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆167Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated last week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆550Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆198Updated last week
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆350Updated 2 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆229Updated last month