vanheeringen-lab / genomepy
genes and genomes at your fingertips
☆386Updated 2 months ago
Alternatives and similar repositories for genomepy:
Users that are interested in genomepy are comparing it to the libraries listed below
- Performant Pythonic GenomicRanges☆453Updated 8 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆794Updated 7 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆321Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆399Updated last month
- A tool to find sequencing data and metadata from public databases.☆565Updated 6 months ago
- Plot structural variant signals from many BAMs and CRAMs☆538Updated 7 months ago
- RNA-seq workflow using STAR and DESeq2☆336Updated 6 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆394Updated 10 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆407Updated last month
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆269Updated 8 months ago
- Bioinformatics Workbook repository☆182Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆483Updated last week
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated last week
- parallel fastq-dump wrapper☆287Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆156Updated last year
- Application for making ENCODE Blacklists☆291Updated 3 years ago
- Fast genome-wide functional annotation through orthology assignment☆588Updated 9 months ago
- TransDecoder source☆285Updated 4 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆355Updated 2 months ago
- Nextflow training material☆142Updated this week
- An accurate GFF3/GTF lift over pipeline☆467Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆424Updated this week
- ☆263Updated last week
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated this week
- Transcript assembly and quantification for RNA-Seq☆412Updated this week