ExaScience / elprepLinks
elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
☆289Updated 2 years ago
Alternatives and similar repositories for elprep
Users that are interested in elprep are comparing it to the libraries listed below
Sorting:
- A lightweight and high-performance bioinformatics package in Golang☆93Updated 10 months ago
- biogo high throughput sequencing repository☆126Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆221Updated 9 months ago
- biogo is a bioinformatics library for Go☆396Updated last year
- genetic variant expressions, annotation, and filtering for great good.☆262Updated last week
- An ultrafast memory-efficient short read aligner☆264Updated 3 years ago
- Interval data structure☆233Updated 7 months ago
- BEDOPS: high-performance genomic feature operations☆344Updated 2 months ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆191Updated 9 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆254Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆379Updated 2 weeks ago
- Bioinformatic infrastructure libraries☆78Updated 4 years ago
- GenomicsDB☆111Updated 2 years ago
- BWK awk modified for biological data☆624Updated 2 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆105Updated 7 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated last month
- a lightweight db framework for exploring genetic variation.☆323Updated 5 years ago
- A tool for estimating repeat sizes☆195Updated last year
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago
- Reads simulator☆280Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Assemble large genomes using short reads☆321Updated 3 months ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆292Updated 2 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆250Updated last year
- ☆82Updated 6 years ago
- FASTA/FASTQ pre-processing programs☆190Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated last week
- a toolkit for working with Oxford nanopore data☆245Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 5 years ago