A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
☆13Aug 17, 2018Updated 7 years ago
Alternatives and similar repositories for widdler
Users that are interested in widdler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 10 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Backend for storing squads created with (Yet Another) X-Wing Squad Builder.☆11Jan 18, 2023Updated 3 years ago
- Reference server implementation for the GA4GH HTSget API standard.☆12Apr 8, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of reusable WDL tasks. Category:Other☆89Updated this week
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆89May 15, 2019Updated 7 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 8 months ago
- ☆10Oct 12, 2023Updated 2 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Example project for integrating igv.js and flask☆26May 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dockerfile to build a container with SGE installed☆23Mar 23, 2016Updated 10 years ago
- Bioinformatic infrastructure libraries☆79Aug 18, 2020Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆26Oct 6, 2020Updated 5 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 9, 2026Updated 2 months ago
- Simple Job Manager☆59Jul 20, 2017Updated 9 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 3 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- this is a collection of useful functionality for go apps (itertools and others)☆15Oct 17, 2015Updated 10 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 6 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Jun 6, 2023Updated 3 years ago
- ☆14Jan 21, 2021Updated 5 years ago
- CKA 练习环境,适配中国国内网络环境,使用 vagrant 进行管理虚拟机,并使用阿里源☆11Dec 21, 2020Updated 5 years ago
- ☆14Mar 18, 2026Updated 4 months ago
- tabix file access with golang using biogo machinery☆10Jul 1, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Utility workflows for the DSP hydro.gen team (formerly palantir)☆31Updated this week
- GWAS catalogue for Arabidopsis thaliana☆11Feb 29, 2024Updated 2 years ago
- A python queue that acts like an iterator and knows when producers are finished☆14Aug 2, 2017Updated 9 years ago
- baidu netdisk command-line api☆11Jul 18, 2023Updated 3 years ago
- ☆13Jun 4, 2023Updated 3 years ago
- open files for buffered reading and writing in #golang☆60Jun 2, 2022Updated 4 years ago
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated last year