A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
☆14Aug 17, 2018Updated 7 years ago
Alternatives and similar repositories for widdler
Users that are interested in widdler are comparing it to the libraries listed below
Sorting:
- CLI for interacting with Cromwell servers☆55Apr 2, 2024Updated last year
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 5 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Backend for storing squads created with (Yet Another) X-Wing Squad Builder.☆11Jan 18, 2023Updated 3 years ago
- Reference server implementation for the GA4GH HTSget API standard.☆12May 11, 2023Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- A collection of reusable WDL tasks. Category:Other☆88Mar 10, 2026Updated last week
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88May 15, 2019Updated 6 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Example project for integrating igv.js and flask☆26May 17, 2025Updated 10 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Dockerfile to build a container with SGE installed☆24Mar 23, 2016Updated 9 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 3 months ago
- ☆10Oct 12, 2023Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆41Nov 24, 2022Updated 3 years ago
- Simple Job Manager☆60Jul 20, 2017Updated 8 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- Notebooks for CPA figures☆14Dec 9, 2022Updated 3 years ago
- ☆14Jan 21, 2021Updated 5 years ago
- CKA 练习环境,适配中国国内网络环境,使用 vagrant 进行管理虚拟机,并使用阿里 源☆11Dec 21, 2020Updated 5 years ago
- ☆14Updated this week
- baidu netdisk command-line api☆10Jul 18, 2023Updated 2 years ago
- 新型冠状病毒(2019-nCoV)肺炎(COVID-19)疫情展示☆13Feb 16, 2023Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- A python queue that acts like an iterator and knows when producers are finished☆14Aug 2, 2017Updated 8 years ago
- GWAS catalogue for Arabidopsis thaliana☆11Feb 29, 2024Updated 2 years ago
- open files for buffered reading and writing in #golang☆61Jun 2, 2022Updated 3 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆16Jan 14, 2026Updated 2 months ago
- ☆13Jun 4, 2023Updated 2 years ago
- A Java API for high-throughput sequencing data (HTS) formats.☆296Feb 25, 2026Updated 3 weeks ago
- Utility workflows for the DSP hydro.gen team (formerly palantir)☆26Updated this week