Suite of tools for use in genome assembly and consensus. Work in progress.
☆31Mar 22, 2021Updated 5 years ago
Alternatives and similar repositories for downpore
Users that are interested in downpore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆53May 16, 2022Updated 3 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- ☆12Sep 7, 2019Updated 6 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Oct 15, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated last month
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Nov 9, 2024Updated last year
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Feb 9, 2026Updated 2 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- ☆19Nov 21, 2024Updated last year
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 4 years ago
- Bioinformatic infrastructure libraries☆78Aug 18, 2020Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago