Alternatives and similar repositories for downpore

Users that are interested in downpore are comparing it to the libraries listed below

• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated this week
• VGP / vgp-tools
  ☆28Updated last month
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 4 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated last year
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated 2 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆18Updated this week
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated 7 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 5 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆66Updated 2 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 2 months ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 7 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• brentp / indelope
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Updated 7 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• DEploid-dev / DEploid
  dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…
  ☆21Updated 3 months ago
• ndaniels / MICA
  MIcrobiomes using Compressive Acceleration
  ☆17Updated 7 years ago
• lh3 / trimadap
  Fast but inaccurate adapter trimmer for Illumina reads
  ☆14Updated 3 years ago
• kevlar-dev / kevlar
  Reference-free variant discovery in large eukaryotic genomes
  ☆41Updated 3 years ago
• seandavi / GFFutils
  Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
  ☆36Updated 14 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 5 years ago
• mourisl / Rascaf
  Scaffolding with RNA-seq read alignment
  ☆20Updated 6 years ago