Alternatives and similar repositories for orbit

Users that are interested in orbit are comparing it to the libraries listed below

• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 10 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated last week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 9 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 weeks ago
• Nanguage / bioView
  Readability enhancement tool for bioinformatics data file format
  ☆29Updated 5 years ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 5 months ago
• BUStools / BUS-format
  BUS format specification
  ☆13Updated 5 years ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆39Updated 6 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆80Updated last week
• COMBINE-lab / grangers
  ☆16Updated 9 months ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 3 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆21Updated 4 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• mfcovington / auto_barcode
  Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
  ☆13Updated 9 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆33Updated 6 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• itmat / Normalization
  RNA-Seq normalization and quantification pipeline
  ☆12Updated 11 months ago
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆28Updated last year
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated last year
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 8 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• COMBINE-lab / pyroe
  ☆16Updated 9 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 4 years ago