10XGenomics / orbitLinks
Rust wrapper for STAR aligner
☆17Updated this week
Alternatives and similar repositories for orbit
Users that are interested in orbit are comparing it to the libraries listed below
Sorting:
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 7 months ago
- Efficient querying of biological databases☆39Updated 3 weeks ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Updated last week
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- BUS format specification☆14Updated 5 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- fast, reliable and handy demultiplexing tool for fastx files☆14Updated 2 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 3 months ago
- Rust wrapper of the BWA C API☆18Updated last month
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- Alignment-based gene expression quantification☆29Updated 3 months ago
- gia: Genomic Interval Arithmetic☆65Updated 10 months ago
- ☆58Updated 2 years ago
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- ☆22Updated 7 months ago
- ☆17Updated 5 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Fast interval intersection library☆41Updated this week
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- ☆22Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆26Updated 11 months ago
- ☆17Updated this week
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year