Rust wrapper for STAR aligner
☆19Mar 16, 2026Updated this week
Alternatives and similar repositories for orbit
Users that are interested in orbit are comparing it to the libraries listed below
Sorting:
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- Rust wrapper of the BWA C API☆19May 23, 2025Updated 9 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Numerical Run Length Encoding and Arithmetic in Cython☆19Jan 28, 2026Updated last month
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Simulation, Bayesian inference and Bayesian model selection for chemical kinetics in Julia☆17Mar 28, 2017Updated 8 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- Single-cell analysis methods in Rust☆30Nov 4, 2025Updated 4 months ago
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 2 weeks ago
- ☆19Updated this week
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆67Feb 10, 2026Updated last month
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆40Jul 14, 2025Updated 8 months ago
- ☆23Jan 20, 2021Updated 5 years ago
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆21Jan 30, 2026Updated last month
- Bioinformatic infrastructure libraries☆78Aug 18, 2020Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 10 months ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- This bartender version could handle arbitrary length of barcode☆33Jan 6, 2024Updated 2 years ago
- MUMmer for HPC☆17Jan 7, 2013Updated 13 years ago
- ☆52Sep 20, 2022Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- A pedagogical, functional-oriented deep learning library built on top of jax.☆15Jul 19, 2021Updated 4 years ago
- Interpretable genotype-phenotype landscape modeling☆36Dec 3, 2023Updated 2 years ago
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆34Sep 6, 2023Updated 2 years ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆201Updated this week
- FASTA and FASTQ parsing in Rust☆83Mar 14, 2025Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 6 months ago