10XGenomics / orbitLinks
Rust wrapper for STAR aligner
☆18Updated this week
Alternatives and similar repositories for orbit
Users that are interested in orbit are comparing it to the libraries listed below
Sorting:
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 11 months ago
- Efficient querying of biological databases☆42Updated last month
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 2 weeks ago
- Rust wrapper of the BWA C API☆18Updated 6 months ago
- Fasten toolkit, for streaming operations on fastq files☆80Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- ☆21Updated 11 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Readability enhancement tool for bioinformatics data file format☆29Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- BUS format specification☆13Updated 6 years ago
- ☆16Updated 10 months ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 7 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated last month
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- ☆57Updated 3 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Docker containers for bioinformatics with a small footprint☆23Updated 2 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated this week
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 8 years ago
- Gene lists related to cancer immunotherapy☆14Updated last year
- Alignment-based gene expression quantification☆30Updated 3 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago