Alternatives and similar repositories for orbit:

Users that are interested in orbit are comparing it to the libraries listed below

• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆33Updated this week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated 2 weeks ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated 8 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆58Updated 5 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆30Updated 3 years ago
• Ebedthan / sabreur
  fast, reliable and handy demultiplexing tool for fastx files
  ☆14Updated 9 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 10 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆77Updated last week
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 8 months ago
• nh13 / fqme
  ☆22Updated last month
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated this week
• COMBINE-lab / grangers
  ☆17Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 7 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆20Updated 2 months ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆20Updated 2 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆86Updated 8 months ago
• rust-bio / hts-sys
  Raw rust bindings for htslib
  ☆10Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆73Updated last week
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated 11 months ago