Alternatives and similar repositories for bio

Users that are interested in bio are comparing it to the libraries listed below

• biogo / hts
  biogo high throughput sequencing repository
  ☆126Updated last year
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆78Updated 4 years ago
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆221Updated 9 months ago
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆70Updated 8 months ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆191Updated 9 months ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆253Updated last year
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆94Updated 7 months ago
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆84Updated last week
• ryanlayer / giggle
  Interval data structure
  ☆233Updated 6 months ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆97Updated 2 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated 8 months ago
• shenwei356 / kmcp
  Accurate metagenomic profiling && Fast large-scale sequence/genome searching
  ☆193Updated last year
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆230Updated last month
• biogo / biogo
  biogo is a bioinformatics library for Go
  ☆395Updated last year
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆157Updated 2 years ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆109Updated 7 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆219Updated 4 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆148Updated last week
• genome / breakdancer
  SV detection from paired end reads mapping
  ☆117Updated 5 years ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆292Updated last year
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated 2 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 7 months ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆153Updated 2 months ago
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆193Updated last month
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆102Updated this week
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated 2 weeks ago
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆282Updated 8 months ago