Alternatives and similar repositories for bio

Users that are interested in bio are comparing it to the libraries listed below

• biogo / hts
  biogo high throughput sequencing repository
  ☆126Updated last year
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆78Updated 4 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated 9 months ago
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆221Updated 9 months ago
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆84Updated this week
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆70Updated 9 months ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆98Updated 2 years ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆191Updated 9 months ago
• ryanlayer / giggle
  Interval data structure
  ☆233Updated 7 months ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 8 years ago
• biogo / biogo
  biogo is a bioinformatics library for Go
  ☆396Updated last year
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆94Updated 8 months ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• shenwei356 / kmcp
  Accurate metagenomic profiling && Fast large-scale sequence/genome searching
  ☆193Updated last year
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆87Updated 4 months ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆158Updated 2 years ago
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆186Updated 6 months ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆145Updated last year
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆254Updated last year
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 4 months ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆105Updated 2 years ago
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆29Updated last year
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• ncbi / ngs-tools
  ☆107Updated 3 weeks ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆234Updated 2 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated this week
• agordon / fastx_toolkit
  FASTA/FASTQ pre-processing programs
  ☆190Updated 3 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago