shenwei356 / bioLinks
A lightweight and high-performance bioinformatics package in Golang
☆95Updated 2 weeks ago
Alternatives and similar repositories for bio
Users that are interested in bio are comparing it to the libraries listed below
Sorting:
- biogo high throughput sequencing repository☆128Updated this week
- Bioinformatic infrastructure libraries☆79Updated 5 years ago
- A collection of genomics software tools written in Go (golang).☆86Updated last week
- Go / Golang Bioinformatics Library☆45Updated 10 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆222Updated 11 months ago
- a golang library to read, write and manipulate files in the variant call format.☆71Updated 11 months ago
- Golang for Bioinformatics☆31Updated 9 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆191Updated 11 months ago
- biogo is a bioinformatics library for Go☆400Updated last year
- Interval data structure☆235Updated 8 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆96Updated 9 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- FASTA/FASTQ pre-processing programs☆190Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆99Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated this week
- Graph realignment tools for structural variants☆161Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆168Updated 4 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆195Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 6 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- ☆82Updated 6 years ago
- Learning the Sequence Alignment/Map format☆114Updated 3 weeks ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Updated 6 years ago
- Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.☆133Updated last month
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- ☆107Updated 2 months ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month