Alternatives and similar repositories for bio

Users that are interested in bio are comparing it to the libraries listed below

• biogo / hts
  biogo high throughput sequencing repository
  ☆130Updated 2 months ago
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆86Updated this week
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆79Updated 5 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆224Updated last month
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆72Updated 2 months ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 9 years ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆195Updated last year
• ryanlayer / giggle
  Interval data structure
  ☆235Updated 10 months ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆101Updated 2 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆108Updated 2 weeks ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆258Updated last year
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆95Updated 11 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated 2 weeks ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆101Updated 3 years ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆101Updated 10 months ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• mozack / abra2
  ABRA2
  ☆93Updated 2 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 8 months ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆171Updated last year
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆163Updated 2 years ago
• pb-jchin / VariantNET
  A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
  ☆59Updated 7 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated 2 years ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆129Updated 2 weeks ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆83Updated 2 years ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆138Updated 5 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago