splatlab / mantisLinks
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
☆81Updated last year
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below
Sorting:
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 5 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Substring index for paths in a graph☆60Updated 2 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆88Updated this week
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 7 months ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- ☆25Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- Efficient, parallel compression for terabyte-scale data☆47Updated 2 months ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ☆18Updated 7 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago