borenstein-lab / MIMOSAView external linksLinks
Model-based Integration of Metabolite Observations and Species Abundances
☆24Feb 21, 2020Updated 5 years ago
Alternatives and similar repositories for MIMOSA
Users that are interested in MIMOSA are comparing it to the libraries listed below
Sorting:
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆39Mar 22, 2022Updated 3 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 6 years ago
- ☆15Dec 16, 2024Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 3 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Mar 26, 2024Updated last year
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 3 months ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆24Apr 22, 2020Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Jan 15, 2026Updated 3 weeks ago
- An interactive radial tree for functional hierarchies and omics data visualization☆26Nov 22, 2022Updated 3 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- ☆10Feb 28, 2018Updated 7 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Oct 3, 2023Updated 2 years ago
- ☆17Apr 19, 2021Updated 4 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 5 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆13Mar 7, 2019Updated 6 years ago
- ☆23Sep 27, 2019Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated this week
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- ☆12Apr 6, 2021Updated 4 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- ☆12May 11, 2016Updated 9 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 9 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆35Jul 15, 2019Updated 6 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Apr 14, 2025Updated 9 months ago
- ☆16Dec 26, 2022Updated 3 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆17Nov 23, 2020Updated 5 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Mar 17, 2023Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago