ggloor / q2-aldex2
qiime2 plugin for aldex2 for differential abundance analysis
☆10Updated 4 years ago
Alternatives and similar repositories for q2-aldex2:
Users that are interested in q2-aldex2 are comparing it to the libraries listed below
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 4 months ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- ☆13Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- selbal: selection of balances for microbial signatures☆31Updated this week
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Plot microbiome time series in parallel☆25Updated last year
- Metagenomics-related extended functionalities to samtools☆20Updated last year
- ☆49Updated 10 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆29Updated this week
- Estimate metagenomic coverage and sequence diversity☆48Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last week
- ☆28Updated last year
- GraftM - Rapid community profiles from metagenomes☆44Updated 7 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆23Updated 4 months ago
- KEGG Module Evaluation Tool☆28Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆22Updated this week
- Compare different differential abundance and expression methods☆51Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆36Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- SHallow shOtGUN profiler☆53Updated 2 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆19Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆54Updated this week
- ☆17Updated 2 years ago