qiime2 plugin for aldex2 for differential abundance analysis
☆11Mar 5, 2020Updated 6 years ago
Alternatives and similar repositories for q2-aldex2
Users that are interested in q2-aldex2 are comparing it to the libraries listed below
Sorting:
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Apr 4, 2025Updated 11 months ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Aug 4, 2024Updated last year
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated last month
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆13Mar 7, 2019Updated 7 years ago
- ☆13Feb 6, 2020Updated 6 years ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆20Jan 27, 2026Updated last month
- Multinomial Logistic-Normal Models (really fast)☆20Feb 26, 2025Updated last year
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆24Dec 19, 2023Updated 2 years ago
- ☆20Jun 8, 2020Updated 5 years ago
- ☆21Apr 25, 2025Updated 10 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 3 months ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Neural networks for microbe-metabolite interaction analysis☆129Nov 4, 2022Updated 3 years ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated last year
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30May 1, 2025Updated 10 months ago
- Remove lambda phage reads from a fastq file☆29Jan 16, 2023Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- ☆14Mar 22, 2018Updated 7 years ago
- A LaTeX template for Masters (M.Sc.) and Doctorate (Ph.D) theses in the Tel-Aviv University.☆10Feb 4, 2021Updated 5 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- ☆37Jan 13, 2022Updated 4 years ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 6 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Nov 3, 2025Updated 4 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆42Aug 13, 2025Updated 6 months ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year