ggloor / q2-aldex2Links
qiime2 plugin for aldex2 for differential abundance analysis
☆11Updated 5 years ago
Alternatives and similar repositories for q2-aldex2
Users that are interested in q2-aldex2 are comparing it to the libraries listed below
Sorting:
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆18Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆60Updated 5 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- GraftM - Rapid community profiles from metagenomes☆47Updated last month
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆62Updated 6 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- selbal: selection of balances for microbial signatures☆32Updated 9 months ago
- ☆14Updated 8 years ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- More scalable dereplication for metagenome assembled genomes☆74Updated this week
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last year