MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
☆33Nov 26, 2015Updated 10 years ago
Alternatives and similar repositories for metapathways2
Users that are interested in metapathways2 are comparing it to the libraries listed below
Sorting:
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 5 months ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- Clustering cONtigs with COverage and ComposiTion☆137Mar 6, 2020Updated 5 years ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- Interactive Visual Analysis of differential gene expression test results☆22Jan 9, 2017Updated 9 years ago
- StrainFinder☆29Jul 8, 2018Updated 7 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 8 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated last month
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Aug 12, 2019Updated 6 years ago
- FinalVersions☆17Apr 3, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆13Mar 7, 2019Updated 6 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- ☆13Aug 30, 2023Updated 2 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 8 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated last month
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Feb 6, 2025Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated last year