hallamlab / metapathways2Links
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
☆33Updated 10 years ago
Alternatives and similar repositories for metapathways2
Users that are interested in metapathways2 are comparing it to the libraries listed below
Sorting:
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 8 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 7 years ago
- Visualize whole genome alignments as linear maps☆74Updated last week
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- Estimate metagenomic coverage and sequence diversity☆58Updated last month
- Metagenomic binning suite☆29Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- SINA - Reference based multiple sequence alignment☆41Updated 5 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- StrainFinder☆29Updated 7 years ago
- ☆20Updated 9 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago