hallamlab / metapathways2Links
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
☆33Updated 9 years ago
Alternatives and similar repositories for metapathways2
Users that are interested in metapathways2 are comparing it to the libraries listed below
Sorting:
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ☆53Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- StrainFinder☆27Updated 7 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Metagenomic binning suite☆29Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- ☆23Updated 7 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 3 weeks ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 7 months ago
- ☆45Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 11 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago