MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
☆33Nov 26, 2015Updated 10 years ago
Alternatives and similar repositories for metapathways2
Users that are interested in metapathways2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated 2 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 3 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 11 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Interactive Visual Analysis of differential gene expression test results☆22Jan 9, 2017Updated 9 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 10 years ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Oct 3, 2023Updated 2 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 9 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 6 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆69Aug 12, 2019Updated 7 years ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- ☆133Jul 9, 2023Updated 3 years ago
- CBIOMES seeks to develop and apply quantitative models of the structure and function of marine microbial communities at seasonal and basi…☆18Oct 3, 2019Updated 6 years ago
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jul 17, 2026Updated 2 months ago
- A tool to circularize genome assemblies☆259Apr 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- ☆20Feb 13, 2016Updated 10 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last month
- Prodigal Gene Prediction Software☆553Jan 23, 2024Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated last month