ggloor / CoDaSeqLinks
Functions for compositional analysis of high throughput sequencing
☆29Updated last year
Alternatives and similar repositories for CoDaSeq
Users that are interested in CoDaSeq are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Speedy versions of phyloseq functions☆47Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- ☆20Updated 5 years ago
- diversity estimation under ecological networks☆83Updated last month
- functions for analyzing phyloseq data☆28Updated 7 months ago
- selbal: selection of balances for microbial signatures☆32Updated 6 months ago
- Transform files to the microtable object with microeco package☆28Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆124Updated 2 weeks ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆51Updated this week
- Tools for visualising microbial community amplicon data☆68Updated 3 weeks ago
- Linear Decomposition Model☆24Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆119Updated last month
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- ☆11Updated 5 months ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- ☆13Updated 5 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year