ggloor / CoDaSeq
Functions for compositional analysis of high throughput sequencing
☆29Updated last year
Alternatives and similar repositories for CoDaSeq:
Users that are interested in CoDaSeq are comparing it to the libraries listed below
- ☆20Updated 4 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- A microbiome analysis toolkit for R☆22Updated last year
- functions for analyzing phyloseq data☆27Updated 3 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated this week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Plot microbiome time series in parallel☆26Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- Transform files to the microtable object with microeco package☆26Updated last month
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆10Updated 2 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Linear Decomposition Model☆24Updated last year
- ☆55Updated last week
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- ☆41Updated 7 years ago
- Working with the outputs of sourmash in R☆27Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 9 months ago
- ☆13Updated 5 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago