ggloor / CoDaSeqLinks
Functions for compositional analysis of high throughput sequencing
☆29Updated last year
Alternatives and similar repositories for CoDaSeq
Users that are interested in CoDaSeq are comparing it to the libraries listed below
Sorting:
- Speedy versions of phyloseq functions☆48Updated last year
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- ☆20Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- A microbiome analysis toolkit for R☆23Updated last year
- functions for analyzing phyloseq data☆28Updated 5 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- diversity estimation under ecological networks☆84Updated 3 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- ☆13Updated 5 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- selbal: selection of balances for microbial signatures☆31Updated 4 months ago
- SourceTracker2☆76Updated last year
- Transform files to the microtable object with microeco package☆27Updated 3 months ago
- ☆56Updated this week
- SHallow shOtGUN profiler☆54Updated 3 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Tools for visualising microbial community amplicon data☆67Updated 2 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago