everest-castaneda / knextLinks
Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Markup Language File to a TSV file that is usable in network analyses.
☆10Updated last year
Alternatives and similar repositories for knext
Users that are interested in knext are comparing it to the libraries listed below
Sorting:
- Flexible analysis of high-content CRISPR screening☆31Updated 3 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Network Visualization using both GUI and Programming☆28Updated last month
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- Benchmarking gene embeddings on single, paired, and gene set tasks☆12Updated 2 weeks ago
- Deep learning embedding for nucleotide sequences☆19Updated 3 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆14Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 5 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- ☆18Updated last year
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆11Updated 2 years ago
- Python port of the R Bioconductor `seqLogo` package☆33Updated 11 months ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated last year
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆22Updated last month
- Python package to plot sequence logos☆29Updated last year
- Automated Explainable AI for Omics☆26Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated 2 months ago
- ☆38Updated last year
- Genomic sequence preprocessing toolkit☆12Updated 3 weeks ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 6 months ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 8 months ago
- Python package for analyzing and visualizing iModulons☆13Updated 3 weeks ago
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 5 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 7 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago