A pipeline for construction and graphical visualization of annotated pangenome networks.
☆16Oct 24, 2018Updated 7 years ago
Alternatives and similar repositories for MetaPGN
Users that are interested in MetaPGN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- ☆12Apr 21, 2016Updated 10 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Jul 19, 2013Updated 12 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- ☆19Jun 28, 2026Updated last week
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 9 months ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 4 years ago
- ☆23May 8, 2023Updated 3 years ago
- ☆11Mar 14, 2026Updated 3 months ago
- Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.☆18Apr 28, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Simple Text Mining Tool for Analyzing Research Paper Abstracts☆14Aug 2, 2015Updated 10 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Jan 29, 2024Updated 2 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- ☆11Sep 28, 2017Updated 8 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- simple and not slow ORF caller☆23Apr 7, 2026Updated 2 months ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- End-to-end structural variant post-processing: unify, merge, compare, and export from SV caller.☆42Jun 26, 2026Updated last week
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated last month
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 9 months ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed b…☆10Nov 22, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 11 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago