peng-ye / MetaPGNLinks
A pipeline for construction and graphical visualization of annotated pangenome networks.
☆17Updated 6 years ago
Alternatives and similar repositories for MetaPGN
Users that are interested in MetaPGN are comparing it to the libraries listed below
Sorting:
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 4 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 2 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 11 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 weeks ago
- ☆13Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- ☆17Updated last year
- De novo VIral Genome Annotator☆23Updated 10 months ago
- ☆16Updated 3 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ☆43Updated last year
- snapper☆13Updated last year
- TransAnnot - a fast transcriptome annotation pipeline☆18Updated 6 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆26Updated 4 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Better Alignments with Translated HMMER☆21Updated 3 weeks ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- ☆16Updated last month
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- KBase distribution module for RASTtk.☆13Updated 4 years ago
- PanGenomePipeline☆16Updated last year
- ☆50Updated 3 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆16Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆17Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 6 months ago