peng-ye / MetaPGNLinks
A pipeline for construction and graphical visualization of annotated pangenome networks.
☆17Updated 7 years ago
Alternatives and similar repositories for MetaPGN
Users that are interested in MetaPGN are comparing it to the libraries listed below
Sorting:
- ☆17Updated last month
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 weeks ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last month
- ☆13Updated last year
- ☆42Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆19Updated 10 months ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- A snakemake workflow for metagenomic projects☆15Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- PanGenomePipeline☆16Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 weeks ago
- Pan-genome Analysis☆12Updated 7 months ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.