peng-ye / MetaPGNLinks
A pipeline for construction and graphical visualization of annotated pangenome networks.
☆17Updated 6 years ago
Alternatives and similar repositories for MetaPGN
Users that are interested in MetaPGN are comparing it to the libraries listed below
Sorting:
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- MGnify API toolkit☆20Updated 5 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆16Updated 2 months ago
- ☆13Updated last year
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated last year
- PanGenomePipeline☆16Updated last year
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 3 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆17Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆12Updated 6 years ago
- ☆43Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Find Unique genomic Regions☆30Updated 3 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆23Updated 2 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 7 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 10 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Better Alignments with Translated HMMER☆21Updated last week
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago