BenBeresfordJones / MGBCLinks
The Mouse Gastrointestinal Bacteria Catalogue
☆16Updated 3 years ago
Alternatives and similar repositories for MGBC
Users that are interested in MGBC are comparing it to the libraries listed below
Sorting:
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 6 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 2 years ago
- ☆15Updated this week
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- gutSMASH☆55Updated 7 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Updated 6 years ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Pan-genome Analysis☆12Updated 3 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Qiime2 snakemake pipeline☆18Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 6 years ago
- ☆37Updated last year
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆23Updated 3 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 weeks ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago