BenBeresfordJones / MGBCLinks
The Mouse Gastrointestinal Bacteria Catalogue
☆15Updated 3 years ago
Alternatives and similar repositories for MGBC
Users that are interested in MGBC are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 4 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- ☆13Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆18Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Microbiome profiling☆16Updated last month
- ☆13Updated last year
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- ☆22Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- A healthy human gut genome collection☆22Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year