Gibbons-Lab / scfa_predictionsLinks
Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
☆10Updated last year
Alternatives and similar repositories for scfa_predictions
Users that are interested in scfa_predictions are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆25Updated 8 months ago
- ☆18Updated 4 years ago
- Build a map of genes present across a set of microbial genomes☆18Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆15Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆48Updated 9 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆35Updated 5 months ago
- A package to annotate protein sequences☆59Updated 7 months ago
- KEGG Module Evaluation Tool☆31Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- ☆40Updated 4 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- ☆41Updated 3 months ago
- gutSMASH☆55Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 6 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 8 months ago
- ☆45Updated 2 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- http://huttenhower.sph.harvard.edu/waafle☆20Updated 9 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated last week
- ☆30Updated last month
- metabolic heatmap☆21Updated 6 years ago