Alternatives and similar repositories for scfa_predictions

Users that are interested in scfa_predictions are comparing it to the libraries listed below

• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆19Updated last year
• songweizhi / MarkerMAG
  Linking MAGs with 16S rRNA marker genes
  ☆24Updated 3 months ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 8 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆18Updated 7 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 3 years ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆37Updated 9 months ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆27Updated 3 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 4 months ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 5 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 3 weeks ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆58Updated 3 months ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆13Updated 3 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆29Updated last year
• biobakery / metawibele
  MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
  ☆21Updated last month
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆40Updated 5 months ago
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆29Updated 3 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated 9 months ago
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆29Updated 4 months ago
• liaoherui / StrainScan
  High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  ☆40Updated last year
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago