Alternatives and similar repositories for scfa_predictions

Users that are interested in scfa_predictions are comparing it to the libraries listed below

• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆19Updated last year
• mgtools / PhyloMint
  Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
  ☆14Updated 4 years ago
• songweizhi / MarkerMAG
  Linking MAGs with 16S rRNA marker genes
  ☆26Updated 6 months ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated last year
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• valdeanda / mebs
  Protocol for finding informative protein families and then using them to score omic samples
  ☆18Updated 3 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆65Updated last month
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 5 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆30Updated last year
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• kelwyres / Bactabolize
  ☆39Updated last month
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆19Updated 7 months ago
• medema-group / BiG-MAP
  ☆31Updated last month
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆34Updated last month
• genomicepidemiology / ARGprofiler
  A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
  ☆27Updated 6 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 6 months ago
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆12Updated 2 years ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆17Updated 3 weeks ago
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆61Updated last month
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 4 months ago
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆19Updated 2 months ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆13Updated 4 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆20Updated 9 months ago
• functional-dark-side / agnostos-wf
  ☆46Updated 2 years ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 5 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago