waldronlab / curatedMetagenomicDataCurationLinks
Sample Metadata Curation for curatedMetagenomicData
☆29Updated last month
Alternatives and similar repositories for curatedMetagenomicDataCuration
Users that are interested in curatedMetagenomicDataCuration are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- gutSMASH☆55Updated 3 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- StrainFinder☆27Updated 7 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- ☆32Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- ☆32Updated 9 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago