[OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
☆82May 19, 2026Updated 5 months ago
Alternatives and similar repositories for propr
Users that are interested in propr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆30May 11, 2026Updated 5 months ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 6 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 3 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated this week
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆52Feb 8, 2022Updated 4 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆26Jun 5, 2026Updated 4 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- ☆67Oct 12, 2026Updated 2 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 5 months ago
- compositional data analysis toolbox☆63Dec 15, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- tree-aggregated compositional analysis for high-throughput sequencing data☆12Aug 24, 2022Updated 4 years ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 4 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 7 months ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 7 years ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 8 months ago
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- ☆19Mar 8, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 4 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 3 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Oct 19, 2026Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- ☆28Feb 27, 2024Updated 2 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Sep 25, 2026Updated last month
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- TFFM framework☆13Sep 22, 2025Updated last year