Alternatives and similar repositories for propr:

Users that are interested in propr are comparing it to the libraries listed below

• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆105Updated 4 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆69Updated last year
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆89Updated 2 months ago
• microbiome / mia
  Microbiome analysis
  ☆52Updated this week
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆114Updated 3 weeks ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆45Updated 2 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 4 months ago
• statdivlab / tinyvamp
  ☆19Updated last year
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆66Updated 4 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆53Updated last week
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆111Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last year
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago
• XiaoLuo-boy / ggheatmap
  ggplot2 version of heatmap
  ☆87Updated last year
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆73Updated last year
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆143Updated 2 months ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆102Updated 3 weeks ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆88Updated last year
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 3 weeks ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• pinin4fjords / shinyngs
  Shiny apps for NGS etc based on reusable components created using Shiny modules
  ☆75Updated 2 weeks ago
• EnvGen / snakemake-workflows
  Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
  ☆21Updated 6 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆47Updated 3 months ago