ggjlab / HCLLinks
Tools used in Human Cell Landscape(HCL)
☆55Updated 5 years ago
Alternatives and similar repositories for HCL
Users that are interested in HCL are comparing it to the libraries listed below
Sorting:
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- ☆62Updated 6 years ago
- ☆63Updated 5 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆76Updated last month
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆38Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆69Updated 9 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Code repository for single cell RNA-seq☆37Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Functional Inference of Gene Regulation☆48Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- scWGCNA☆61Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- ☆76Updated last year
- ☆58Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year