ggjlab / HCLLinks
Tools used in Human Cell Landscape(HCL)
☆55Updated 5 years ago
Alternatives and similar repositories for HCL
Users that are interested in HCL are comparing it to the libraries listed below
Sorting:
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 8 months ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆38Updated last year
- ☆62Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆30Updated 5 years ago
- ☆63Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆57Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- ☆73Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Functional Inference of Gene Regulation☆46Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- ☆58Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- Code repository for single cell RNA-seq☆37Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago