ggjlab / HCL
Tools used in Human Cell Landscape(HCL)
☆54Updated 4 years ago
Alternatives and similar repositories for HCL:
Users that are interested in HCL are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆96Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆67Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- ☆60Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- ☆49Updated 5 months ago
- Mouse cell atlas☆60Updated 4 years ago
- ☆30Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 10 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- R script for the covid balf data analysis☆65Updated 4 years ago
- ☆39Updated 2 years ago
- ☆46Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 11 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆61Updated last year
- R package for Pathway RespOnsive GENe activity inference☆100Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆100Updated last month