Tools used in Human Cell Landscape(HCL)
☆56Jul 30, 2020Updated 5 years ago
Alternatives and similar repositories for HCL
Users that are interested in HCL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆48Apr 18, 2020Updated 6 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆14Apr 2, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mouse cell atlas☆62Apr 18, 2020Updated 6 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- ☆114Sep 16, 2020Updated 5 years ago
- ☆40Jun 24, 2025Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆41Jan 6, 2021Updated 5 years ago
- ☆298Jun 16, 2026Updated last month
- ☆364Dec 9, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ☆12Nov 9, 2022Updated 3 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated 2 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 8 years ago
- Draw phylogenetic trees of tumor evolution☆86Jul 21, 2023Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆28Sep 19, 2019Updated 6 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated 3 weeks ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- ☆17Mar 6, 2024Updated 2 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 weeks ago
- ☆18Feb 18, 2021Updated 5 years ago
- Quantifying experimental perturbations at single cell resolution☆115Sep 27, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- ☆20Sep 29, 2021Updated 4 years ago
- Single cell typing based on cell ontology☆55Dec 10, 2023Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- ☆10May 31, 2022Updated 4 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago