Alternatives and similar repositories for ECGEA

Users that are interested in ECGEA are comparing it to the libraries listed below

• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 8 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆23Updated 3 years ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆30Updated last year
• chensujun / scRNA
  ☆32Updated 4 years ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆18Updated 10 months ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 7 months ago
• guangchunhan / LUAD_Code
  ☆21Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated 2 months ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆15Updated 4 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 3 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 3 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆32Updated 8 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• miccec / yaGST
  ☆13Updated 7 years ago
• McGranahanLab / ImmuneLENS
  ☆14Updated 5 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆57Updated last year