shahcompbio / wgs
Whole genome workflows
☆12Updated 4 months ago
Alternatives and similar repositories for wgs:
Users that are interested in wgs are comparing it to the libraries listed below
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- ☆20Updated 5 months ago
- ☆17Updated 8 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 3 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- R Package for phasing of single cell Strand-seq data☆10Updated 2 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated 10 months ago
- ☆23Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- isoCirc☆10Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- ☆17Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Package to design primers for MutaSeq and related methods☆11Updated 4 years ago
- ☆11Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- ☆11Updated last year
- ☆13Updated 9 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 9 months ago
- ☆11Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago