ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis
☆9Updated 5 years ago
Alternatives and similar repositories for Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage:
Users that are interested in Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage are comparing it to the libraries listed below
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆19Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated last year
- ☆33Updated last year
- ☆18Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- ☆49Updated 8 months ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆17Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 7 months ago
- A tissue-specific single-cell biological age model☆10Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆14Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆13Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆11Updated 9 months ago
- ☆10Updated last year
- ☆17Updated 7 months ago