Analysis pipeline for CUT&TAG data
☆23Sep 2, 2020Updated 5 years ago
Alternatives and similar repositories for CUTandTAG
Users that are interested in CUTandTAG are comparing it to the libraries listed below
Sorting:
- Pipeline for Cut&Tag analysis☆25Apr 15, 2025Updated 11 months ago
- Tutorial Website☆65Feb 1, 2021Updated 5 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- ☆11Jun 11, 2023Updated 2 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.☆16Mar 12, 2026Updated last week
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆16May 18, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Cellular Genetics Informatics Notebooks☆24Nov 7, 2025Updated 4 months ago
- ☆14Oct 24, 2025Updated 4 months ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- Whole genome workflows☆13Nov 9, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- ☆40Jul 14, 2023Updated 2 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆32Jul 28, 2020Updated 5 years ago
- ☆11Aug 2, 2024Updated last year
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆39Aug 22, 2025Updated 7 months ago
- ☆12Nov 6, 2023Updated 2 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 9 months ago
- ☆13Jan 24, 2024Updated 2 years ago
- ☆49Feb 16, 2022Updated 4 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 3 years ago
- ☆47Apr 18, 2020Updated 5 years ago
- Accurate and fast cell marker gene identification with COSG☆58Mar 7, 2026Updated 2 weeks ago
- Analyze CRISPR and shRNA functional genetic screening data☆12Dec 1, 2025Updated 3 months ago
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆40Apr 30, 2025Updated 10 months ago
- ☆15Jan 18, 2023Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- iterative clustering pipeline of big single cell datasets.☆37Sep 5, 2025Updated 6 months ago
- Tools used in Human Cell Landscape(HCL)☆56Jul 30, 2020Updated 5 years ago
- ☆21Mar 11, 2026Updated last week
- Code for spatial subclone paper☆17Jan 23, 2025Updated last year