CebolaLab / CUTandTAG
Analysis pipeline for CUT&TAG data
☆16Updated 4 years ago
Alternatives and similar repositories for CUTandTAG:
Users that are interested in CUTandTAG are comparing it to the libraries listed below
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- RNA editing tests☆17Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆45Updated 7 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 8 months ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆28Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- ☆24Updated 5 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆19Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆46Updated 7 months ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆24Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- Pipeline for Cut&Tag analysis☆18Updated 2 months ago
- ☆12Updated 8 months ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- ATAC-seq Quality Control☆23Updated 2 months ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago