Alternatives and similar repositories for macsyfinder:

Users that are interested in macsyfinder are comparing it to the libraries listed below

• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆89Updated last month
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆86Updated last year
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆34Updated 6 years ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆91Updated last week
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆105Updated this week
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆72Updated 3 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆130Updated this week
• EBI-Metagenomics / mettannotator
  ☆67Updated last week
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆101Updated this week
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆31Updated last year
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆45Updated last month
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 7 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆74Updated 6 months ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆54Updated 7 months ago
• BackofenLab / CRISPRidentify
  ☆27Updated 2 months ago
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆19Updated 2 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆34Updated 6 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 7 months ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 9 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆100Updated last week
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆93Updated last week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆77Updated last year
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆34Updated last year
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆45Updated last month
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆70Updated 2 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆46Updated last month