MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
☆73Dec 22, 2025Updated 3 months ago
Alternatives and similar repositories for macsyfinder
Users that are interested in macsyfinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25Feb 7, 2025Updated last year
- Systematic search of all known anti-phage systems.☆146Jan 22, 2026Updated 2 months ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆101Jul 11, 2023Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆120Feb 10, 2023Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆294Updated this week
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆612Feb 18, 2026Updated last month
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- ☆156Jun 18, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆585Feb 21, 2026Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆105Dec 5, 2025Updated 3 months ago
- Prediction of prophages from bacterial genomes☆81Updated this week
- An updated pipeline for pangenome investigation☆350Jan 15, 2026Updated 2 months ago
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 3 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆107Feb 15, 2024Updated 2 years ago
- IslandPath standalone software☆36Nov 7, 2023Updated 2 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- fast phage annotation program☆199Feb 1, 2026Updated last month
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 8 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 4 months ago
- Plasmid exploration of bacterial genomes☆23Mar 2, 2022Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated last month
- ☆35Dec 20, 2023Updated 2 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 6 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆97Dec 9, 2025Updated 3 months ago
- SEER, reimplemented in python 🐍🔮☆131May 22, 2025Updated 10 months ago
- Development version of Easyfig☆106Dec 21, 2023Updated 2 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- Code for LazyAF pipeline☆23Feb 12, 2024Updated 2 years ago