klebgenomics / KaptiveLinks
☆54Updated 5 months ago
Alternatives and similar repositories for Kaptive
Users that are interested in Kaptive are comparing it to the libraries listed below
Sorting:
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Gene-flank analysis tool☆30Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- ☆37Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 5 months ago
- IS mapping software☆56Updated 3 years ago
- whole genome MLST analysis☆48Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- IslandPath standalone software☆33Updated last year
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago
- Gene Absence Presence Identification tool.☆27Updated 6 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Recombination-free trees☆60Updated last month
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago