klebgenomics / KaptiveLinks
☆52Updated 3 months ago
Alternatives and similar repositories for Kaptive
Users that are interested in Kaptive are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- whole genome MLST analysis☆46Updated 2 months ago
- Recombination-free trees☆59Updated 5 months ago
- IS mapping software☆56Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Order and orientation of complete bacterial genomes☆28Updated last month
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- A taxonomic classifier of plasmids☆27Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Bacterial GWAS analysis☆43Updated last month
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- ☆36Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week