klebgenomics / KaptiveLinks
☆56Updated this week
Alternatives and similar repositories for Kaptive
Users that are interested in Kaptive are comparing it to the libraries listed below
Sorting:
- Predict plasmids from uncorrected long read data☆41Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- IS mapping software☆57Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated this week
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Bacterial GWAS analysis☆46Updated last month
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Recombination-free trees☆62Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Metagenomic Analysis in Real Time☆28Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Gene-flank analysis tool☆34Updated 11 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Gene Absence Presence Identification tool.☆27Updated 8 months ago
- all methods related to Enterobase☆43Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated last week
- Order and orientation of complete bacterial genomes☆29Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago