Pangenome analysis of eukaryotes.
☆21Sep 21, 2020Updated 5 years ago
Alternatives and similar repositories for Pangloss
Users that are interested in Pangloss are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆27Mar 31, 2026Updated 3 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 4 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pan-genomic sequence analysis☆46Jul 11, 2022Updated 4 years ago
- FunGAP: fungal Genome Annotation Pipeline☆116Jun 8, 2025Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline☆393Jul 12, 2026Updated last week
- starfish: a modular toolkit for giant mobile element annotation☆41Dec 12, 2024Updated last year
- ☆10Apr 16, 2025Updated last year
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.☆52Jul 1, 2026Updated 3 weeks ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated last month
- ☆25Feb 24, 2026Updated 5 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Processing pipeline for pan-genome visulization and exploration☆146Oct 9, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆11Mar 10, 2024Updated 2 years ago
- the pangenome graph builder☆507Updated this week
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- An automated assembly pipeline for microbial genomes☆19Jun 9, 2026Updated last month
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last week
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 6 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago