chmccarthy / PanglossLinks
Pangenome analysis of eukaryotes.
☆18Updated 4 years ago
Alternatives and similar repositories for Pangloss
Users that are interested in Pangloss are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Genome-Genome circle synteny☆25Updated last year
- A program for detection of tRNA genes☆67Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Microbiome classification pipeline☆66Updated 3 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆40Updated 2 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- ☆36Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- Graph-based assembly phasing☆86Updated 3 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago