yinlabniu / HGT-FinderLinks
Program for finding horizontal gene transfer using BLAST result
☆11Updated 2 years ago
Alternatives and similar repositories for HGT-Finder
Users that are interested in HGT-Finder are comparing it to the libraries listed below
Sorting:
- Quality control plotting for long reads☆10Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 3 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- DarkHorse2 source code☆10Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆32Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- transposable element typing pipeline☆19Updated last year
- ☆26Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆33Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 4 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- ☆53Updated 4 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- Automatic evaluation of HGTs☆30Updated 8 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆22Updated 2 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago