yinlabniu / HGT-FinderLinks
Program for finding horizontal gene transfer using BLAST result
☆11Updated 2 years ago
Alternatives and similar repositories for HGT-Finder
Users that are interested in HGT-Finder are comparing it to the libraries listed below
Sorting:
- Quality control plotting for long reads☆10Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- ☆26Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- DarkHorse2 source code☆10Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- transposable element typing pipeline☆19Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 2 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- ☆53Updated 4 years ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated last month
- ☆21Updated 5 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆20Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- genomic alignment similarity search tool☆18Updated 6 months ago