Synteny-enhanced annotation of Bacteriophage genes
☆22Sep 27, 2026Updated last month
Alternatives and similar repositories for Phynteny_transformer
Users that are interested in Phynteny_transformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Phage Annotation using Protein Structures☆178Oct 13, 2026Updated 2 weeks ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 10 months ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆238Oct 21, 2026Updated last week
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool to detect giant viruses aka giant endogenous viral elements (GEVEs) integrated into eukaryotic genomes.☆11Jun 10, 2026Updated 4 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- geNomad: Identification of mobile genetic elements☆340Oct 14, 2026Updated 2 weeks ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- k-mer-based non-Bayesian Taxonomic Classifier☆21May 28, 2026Updated 5 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Sep 30, 2026Updated 3 weeks ago
- ☆12Mar 29, 2025Updated last year
- Strain resolver for metagenomics☆81Aug 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated 4 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 8 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Discover and annotate the virome☆64Jun 10, 2026Updated 4 months ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆112Sep 12, 2026Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 5 months ago
- ☆17Oct 1, 2026Updated 3 weeks ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆22Nov 7, 2025Updated 11 months ago
- Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes …☆23Oct 7, 2026Updated 3 weeks ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated last year
- ☆11Dec 18, 2025Updated 10 months ago
- Bayesian estimation supersedes the t-test☆16Aug 7, 2024Updated 2 years ago
- Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach☆12Oct 21, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes☆14Oct 14, 2024Updated 2 years ago
- Pathogenfinder2☆19Apr 20, 2026Updated 6 months ago
- ☆20Nov 17, 2025Updated 11 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year