Fast Principal Component Analysis of Large-Scale Genome-Wide Data
☆145Jul 26, 2022Updated 3 years ago
Alternatives and similar repositories for flashpca
Users that are interested in flashpca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆196May 2, 2022Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- LD Score Regression (LDSC)☆768Jan 16, 2026Updated 2 months ago
- Causal Mixture Model for GWAS summary statistics☆96Dec 17, 2025Updated 3 months ago
- Canonical SGE cluster genotype imputation pipeline☆12Jan 18, 2016Updated 10 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Oct 25, 2020Updated 5 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆193Sep 11, 2025Updated 6 months ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 5 months ago
- GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;☆21Dec 31, 2021Updated 4 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Eigen tools by Nick Patterson and Alkes Price lab☆200Nov 3, 2023Updated 2 years ago
- ☆50Jul 9, 2025Updated 8 months ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆201Jul 6, 2023Updated 2 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆116Sep 13, 2021Updated 4 years ago
- Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset☆51Mar 15, 2026Updated last week
- ☆27Mar 13, 2026Updated last week
- ☆46Mar 18, 2025Updated last year
- ☆40Jan 24, 2018Updated 8 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- An R package for adaptive shrinkage☆87Jul 24, 2025Updated 7 months ago
- Code for the in-dev PrediXcan Project☆28Oct 17, 2022Updated 3 years ago
- Make LocusZoom-like plots with your own LD matrix.☆49Jul 17, 2022Updated 3 years ago
- R package for "sum of single effects" regression.☆246Updated this week
- Analyses conducting GWAS across the UKBB diverse superpopulations☆64Oct 22, 2025Updated 5 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- cython + htslib == fast VCF and BCF processing☆435Feb 23, 2026Updated last month
- Manhattan plot Generator☆24Jun 1, 2020Updated 5 years ago
- Programs to analyse NGS data for population genetics purposes☆180Aug 27, 2024Updated last year
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 7 months ago
- ☆114Oct 3, 2025Updated 5 months ago
- Software for estimating correlation of trait effect sizes across populations☆54May 30, 2025Updated 9 months ago
- Fast, integrative fine mapping with functional data☆61Aug 22, 2019Updated 6 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago