AndersenLab / VCF-kit
VCF-kit: Assorted utilities for the variant call format
☆129Updated last month
Alternatives and similar repositories for VCF-kit:
Users that are interested in VCF-kit are comparing it to the libraries listed below
- Same species annotation lift over pipeline.☆97Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- ☆119Updated 5 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Bayesian genotyper for structural variants☆130Updated 4 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆108Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆184Updated 10 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆142Updated last month
- accurate LiftOver tool for new genome assemblies☆125Updated 8 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last week
- Phased assembly variant caller☆112Updated 4 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Pangenome-based genome inference☆127Updated this week
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 10 months ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 5 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 weeks ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Jasmine: SV Merging Across Samples☆209Updated 3 months ago