Alternatives and similar repositories for TO-DELETE-PrediXcan:

Users that are interested in TO-DELETE-PrediXcan are comparing it to the libraries listed below

• weizhou0 / GATE
  ☆22Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• thewonlab / H-MAGMA
  ☆32Updated last year
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆57Updated last year
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆44Updated 2 weeks ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 5 months ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• MRCIEU / gwas-vcf-specification
  Specification for the GWAS-VCF format (manuscript in preparation)
  ☆24Updated 3 years ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 6 months ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆25Updated 4 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆49Updated 6 years ago
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• yanglab-emory / TIGAR
  ☆21Updated 4 months ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆37Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆30Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 3 months ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆47Updated 2 weeks ago
• MRCIEU / ariesmqtl
  Scripts to run mQTL analyses as described in the ARIES mQTL paper
  ☆9Updated 9 years ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆22Updated 2 months ago
• sanderslab / WGS-pipeline
  WGS Pipeline
  ☆13Updated 7 years ago
• MRCIEU / gwas2vcf
  Convert GWAS summary statistics to VCF
  ☆47Updated 2 years ago
• zhilizheng / SBayesRC
  ☆30Updated 6 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆109Updated 2 years ago