daviddaiweizhang / fraposaLinks
☆16Updated 2 years ago
Alternatives and similar repositories for fraposa
Users that are interested in fraposa are comparing it to the libraries listed below
Sorting:
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Updated 6 years ago
- ☆24Updated 11 months ago
- ☆46Updated 3 months ago
- Applying polygenic scores (PGS) on imputed genotypes☆31Updated this week
- Specification for the GWAS-VCF format (manuscript in preparation)☆25Updated 4 years ago
- Scripts used for generating Neale Lab UKB results☆20Updated 3 years ago
- Fork of ricopili for development of pipeline for family-based data☆18Updated 4 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- ☆23Updated last month
- ☆40Updated 7 years ago
- ☆11Updated 2 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Liftover VCF files☆18Updated 8 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆34Updated 8 months ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆15Updated 2 months ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Updated 10 months ago
- Convert GWAS summary statistics to VCF☆48Updated 2 years ago
- Training material for the GWAS Catalog REST API workshop☆13Updated 2 years ago
- ☆20Updated 2 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Genetic maps interpolated to sites in the 1000 Genomes project☆50Updated 10 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Updated 2 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Documentation on new GWAS Summary Statistics Standard☆23Updated last year
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆42Updated last month
- ☆33Updated 4 years ago