Alternatives and similar repositories for fraposa:

Users that are interested in fraposa are comparing it to the libraries listed below

• lukfor / pgs-calc
  Applying polygenic scores (PGS) on imputed genotypes
  ☆28Updated 9 months ago
• Nealelab / picopili
  Fork of ricopili for development of pipeline for family-based data
  ☆17Updated last year
• statgen / topmed_variant_calling
  ☆24Updated 4 months ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 7 months ago
• mcveanlab / TreeWAS
  ☆16Updated 7 years ago
• CshlSiepelLab / LINSIGHT
  ☆25Updated 10 months ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• yukt / MetaMinimac2
  ☆11Updated 2 years ago
• joepickrell / 1000-genomes-genetic-maps
  Genetic maps interpolated to sites in the 1000 Genomes project
  ☆48Updated 9 years ago
• weizhou0 / GATE
  ☆22Updated last year
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆32Updated 5 years ago
• kaustubhad / gwas-power
  R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…
  ☆19Updated 6 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• Atkinson-Lab / Post-QC
  Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…
  ☆10Updated 5 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆22Updated 7 years ago
• sanderslab / WGS-pipeline
  WGS Pipeline
  ☆13Updated 7 years ago
• healthdisparities / rye
  Large scale ancestry inference from PCA data
  ☆21Updated last year
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 3 years ago
• Helix-Research-Lab / PGxPOP
  PGxPOP
  ☆16Updated 2 years ago
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆23Updated 7 months ago
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• awilfert / PSAP-pipeline
  ☆14Updated 7 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• lemieuxl / pyplink
  Python module to read binary Plink files.
  ☆17Updated 9 months ago
• EBISPOT / gwas-summary-statistics-standard
  Documentation on new GWAS Summary Statistics Standard
  ☆19Updated 7 months ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago