ywchoi / phasing
Evaluation of phasing performance
☆22Updated 7 years ago
Alternatives and similar repositories for phasing:
Users that are interested in phasing are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 3 weeks ago
- Liftover VCF files☆18Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆35Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- Structural variant merging tool☆49Updated 8 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- SV genotyping with long reads☆40Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆39Updated 8 months ago
- ☆20Updated 2 months ago
- Variant annotation and merging pipeline☆34Updated last month
- R-package: Calculation of haplotype blocks and libraries☆30Updated 2 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last week