Evaluation of phasing performance
☆23Mar 6, 2018Updated 8 years ago
Alternatives and similar repositories for phasing
Users that are interested in phasing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 9 months ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- ☆32May 7, 2026Updated 5 months ago
- ☆13Oct 13, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- ☆13Oct 9, 2026Updated 3 weeks ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 6 months ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 7 months ago
- ☆13Sep 11, 2025Updated last year
- software tools for haplotype assembly from sequence data☆234Feb 9, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Ascertained Sequentially Markovian Coalescent☆19Oct 23, 2026Updated last week
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 6 years ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- ☆10Jun 9, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆94Aug 22, 2025Updated last year
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 4 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- ☆10Oct 21, 2019Updated 7 years ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 8 months ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 2 weeks ago
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 10 years ago
- Parse Copy Number Variation from Array and Sequencing☆19Dec 1, 2023Updated 2 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Oct 15, 2026Updated 2 weeks ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆106Sep 1, 2022Updated 4 years ago