Alternatives and similar repositories for phasing

Users that are interested in phasing are comparing it to the libraries listed below

• talkowski-lab / svtk
  ☆35Updated 4 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• 0xTCG / haptreex
  Haplotype phaser for next-generation sequencing data
  ☆13Updated 3 years ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated 2 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 9 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆20Updated last year
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 4 months ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 8 months ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆37Updated 8 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆16Updated 2 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆35Updated 2 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 7 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 6 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago