Evaluation of phasing performance
☆23Mar 6, 2018Updated 8 years ago
Alternatives and similar repositories for phasing
Users that are interested in phasing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 5 months ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 8 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- ☆12Sep 11, 2025Updated 9 months ago
- ☆13Jul 17, 2024Updated last year
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 2 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- ☆32May 7, 2026Updated last month
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 4 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆93Aug 22, 2025Updated 10 months ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- PhenoScore is an open source, artificial intelligence-based phenomics framework that combines facial recognition technology with Human Ph…☆21Aug 19, 2025Updated 10 months ago
- ☆18Aug 25, 2025Updated 10 months ago
- ☆28Mar 13, 2026Updated 3 months ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- Infer a tree sequence from genetic variation data.☆64Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- Simple R script for plotting ideograms and annotating with bed files.☆12Sep 21, 2015Updated 10 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago