R package for the analysis of massive SNP arrays.
☆227Jul 10, 2026Updated 3 months ago
Alternatives and similar repositories for bigsnpr
Users that are interested in bigsnpr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for statistical tools with big matrices stored on disk.☆180Jun 5, 2026Updated 4 months ago
- LASSO for GWAS with summary statistics☆81Sep 24, 2020Updated 6 years ago
- Polygenic prediction via continuous shrinkage priors☆218Oct 9, 2026Updated 3 weeks ago
- R package for "sum of single effects" regression.☆272Oct 25, 2026Updated last week
- ☆104Jul 29, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆199May 2, 2022Updated 4 years ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆178Jun 3, 2026Updated 4 months ago
- Implementation of LTFH++☆11Nov 17, 2025Updated 11 months ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆211Apr 10, 2026Updated 6 months ago
- Genotype-based Prediction (GenoPred)☆80Sep 24, 2026Updated last month
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆217Jul 6, 2023Updated 3 years ago
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆395Jun 7, 2023Updated 3 years ago
- Sparse matrix format with data on disk☆11Mar 23, 2026Updated 7 months ago
- LD Score Regression (LDSC)☆806Jan 16, 2026Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆16May 25, 2017Updated 9 years ago
- ☆69Jun 24, 2025Updated last year
- Repo for the R package coloc☆213Oct 24, 2026Updated last week
- R-package for structural equation modeling based on GWAS summary data☆304Sep 28, 2026Updated last month
- Notes on SNP-related tools and genome variation analysis☆29Oct 18, 2026Updated 2 weeks ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆34Feb 23, 2026Updated 8 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆312Sep 25, 2026Updated last month
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 7 years ago
- Read PLINK BED/BIM/FAM files into R☆44Jul 26, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 📊 Circular and Rectangular Manhattan Plot☆648May 8, 2026Updated 5 months ago
- Cross-population polygenic prediction☆114Oct 9, 2026Updated 3 weeks ago
- Harmonise GWAS summary statistics against a reference VCF☆40Jun 15, 2021Updated 5 years ago
- A list of awesome tools for complex trait genetics.☆89Jan 28, 2025Updated last year
- A tool to build a website to browse hundreds or thousands of GWAS.☆199Apr 22, 2026Updated 6 months ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆59Oct 5, 2026Updated 3 weeks ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆270Oct 2, 2026Updated 3 weeks ago
- A tutorial on how to run basic polygenic risk score analysis☆93Jan 24, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for quality control of plink genetic datasets☆82Oct 13, 2026Updated 2 weeks ago
- PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a c…☆529Updated this week
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- Statistical tools for Quantitative Genetic Analyses☆41Apr 16, 2026Updated 6 months ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- Ultrafast GPU-enabled QTL mapper☆218Jun 29, 2025Updated last year
- PLINK reader for Python.☆90May 12, 2025Updated last year