Alternatives and similar repositories for mtag

Users that are interested in mtag are comparing it to the libraries listed below

• chr1swallace / coloc
  Repo for the R package coloc
  ☆174Updated last month
• weizhouUMICH / SAIGE
  ☆194Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆122Updated 2 months ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆86Updated 3 weeks ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated last year
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆189Updated 9 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆88Updated 3 years ago
• josefin-werme / LAVA
  ☆72Updated last week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆124Updated 9 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆185Updated last week
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 3 years ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆145Updated 3 years ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆193Updated 3 years ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆69Updated 3 months ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆70Updated 4 years ago
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆234Updated 2 weeks ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆85Updated 3 years ago
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆173Updated 2 months ago
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆245Updated last month
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆174Updated 9 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆112Updated 2 years ago
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆83Updated this week
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆98Updated last month
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆90Updated 2 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆90Updated 9 months ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆190Updated 2 months ago
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆60Updated last year