CNSGenomics / impute-pipeLinks
Canonical SGE cluster genotype imputation pipeline
☆12Updated 9 years ago
Alternatives and similar repositories for impute-pipe
Users that are interested in impute-pipe are comparing it to the libraries listed below
Sorting:
- ☆40Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- ☆62Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- ☆38Updated 4 years ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- Integrative analysis of structural variations.☆40Updated last year
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Generalized linear Mixed Model Association Tests☆44Updated last year
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆32Updated 3 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆89Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 9 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated last week
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆24Updated 10 months ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆32Updated 9 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Genomic Association Tester☆32Updated 2 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- ☆18Updated last year
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- ☆21Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month