CNSGenomics / impute-pipe
Canonical SGE cluster genotype imputation pipeline
☆12Updated 9 years ago
Alternatives and similar repositories for impute-pipe:
Users that are interested in impute-pipe are comparing it to the libraries listed below
- Manhattan++☆28Updated last year
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- A Fine-Mapping pipeline☆19Updated 5 years ago
- Generalized linear Mixed Model Association Tests☆40Updated last year
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- software package for integrative genetic association analysis☆34Updated last year
- R package to perform Bayesian Genome-Wide Association Studies☆38Updated last year
- ☆40Updated 7 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Colocalization analysis of genetic association signals☆51Updated 3 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 6 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆22Updated 4 months ago
- ☆15Updated 4 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆40Updated 2 weeks ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- ☆18Updated 7 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- Genomic Association Tester☆30Updated last year
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Fast, integrative fine mapping with functional data☆57Updated 5 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆28Updated 3 months ago
- DriverPower☆26Updated 2 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆51Updated last year
- allele specific DNA methylation haplotype region☆13Updated last year
- Tool for GWAS summary-level data analysis☆26Updated 4 years ago