Alternatives and similar repositories for PRSice

Users that are interested in PRSice are comparing it to the libraries listed below

• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆195Updated 2 years ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆185Updated last year
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆188Updated 9 months ago
• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆174Updated 8 months ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆193Updated 3 years ago
• rgcgithub / regenie
  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
  ☆224Updated 3 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆80Updated 2 years ago
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆171Updated last month
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆112Updated 2 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆171Updated last month
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆243Updated last week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆122Updated 8 months ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆143Updated 3 weeks ago
• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆372Updated 2 years ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆86Updated this week
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆143Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆122Updated 2 months ago
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆232Updated last month
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆88Updated 9 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆140Updated 3 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆70Updated 4 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆87Updated 3 years ago
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆149Updated 3 weeks ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆68Updated 2 months ago
• privefl / bigsnpr
  R package for the analysis of massive SNP arrays.
  ☆210Updated last week
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆156Updated last week
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆189Updated 2 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago