☆54Jul 9, 2025Updated last year
Alternatives and similar repositories for hgdp_tgp
Users that are interested in hgdp_tgp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jun 12, 2023Updated 3 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆22Mar 31, 2026Updated 7 months ago
- Partners Biobank genomics data QC☆31Mar 31, 2020Updated 6 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆12Jun 10, 2019Updated 7 years ago
- Statistical And Functional Fine-mApping of GWAS Risk locI (SAFFARI)☆13Sep 2, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PRS pipeline using PRS_CS☆17Oct 6, 2026Updated last month
- A bioinformatics pipeline to phase and impute genetic data☆36Oct 7, 2026Updated last month
- Code accompanying "Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx"☆11Oct 17, 2022Updated 4 years ago
- ☆15Nov 22, 2022Updated 3 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Updated this week
- ☆40Jan 24, 2018Updated 8 years ago
- Polygenic Risk Scores Extension for Diabetes Mellitus (PRSedm)☆14Apr 1, 2026Updated 7 months ago
- This repository provides a set of Python functions to simplify working with gnomAD Hail Tables. It includes tools for data access, filter…☆14Oct 26, 2026Updated last week
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Aug 25, 2025Updated last year
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Aug 9, 2026Updated 2 months ago
- Fork of ricopili for development of pipeline for family-based data☆20Sep 30, 2026Updated last month
- ☆17Mar 21, 2023Updated 3 years ago
- Main ricopili repo for public releases☆54Apr 8, 2025Updated last year
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆119Sep 13, 2021Updated 5 years ago
- Causal Mixture Model for GWAS summary statistics☆102Dec 17, 2025Updated 10 months ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆75Oct 10, 2024Updated 2 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆22Aug 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Hail helper functions for the gnomAD project and Translational Genomics Group☆102Updated this week
- ☆14Dec 2, 2022Updated 3 years ago
- ☆199May 2, 2022Updated 4 years ago
- Structural variant benchmark☆25Mar 4, 2025Updated last year
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated 2 years ago
- ☆71Updated this week
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆68Oct 22, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A list of awesome tools for complex trait genetics.☆89Jan 28, 2025Updated last year
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆148Jul 26, 2022Updated 4 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 7 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 4 months ago
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 3 years ago
- Large scale ancestry inference from PCA data☆26May 2, 2023Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago