☆104Jul 29, 2026Updated 3 months ago
Alternatives and similar repositories for ldpred
Users that are interested in ldpred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆211Apr 10, 2026Updated 6 months ago
- LASSO for GWAS with summary statistics☆81Sep 24, 2020Updated 6 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆17Sep 6, 2020Updated 6 years ago
- LD Score Regression (LDSC)☆806Jan 16, 2026Updated 9 months ago
- Polygenic prediction via continuous shrinkage priors☆218Oct 9, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package for the analysis of massive SNP arrays.☆227Jul 10, 2026Updated 3 months ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆217Jul 6, 2023Updated 3 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆20Nov 26, 2023Updated 2 years ago
- Genetic risk prediction integrating LD and functional annotations☆17Jul 19, 2024Updated 2 years ago
- ☆25Jun 30, 2023Updated 3 years ago
- ☆40Jan 24, 2018Updated 8 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆20Aug 30, 2024Updated 2 years ago
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆395Jun 7, 2023Updated 3 years ago
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A small C and Python library for reading PLINK genotype files.☆52Nov 27, 2024Updated last year
- ☆199May 2, 2022Updated 4 years ago
- Notes and code for running UK Biobank GWAS at the MRC IEU☆19Jul 18, 2024Updated 2 years ago
- Scripts for working with Google Cloud Dataproc service☆37Jun 19, 2019Updated 7 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 8 years ago
- ☆42Jan 20, 2021Updated 5 years ago
- MetaXcan software and manuscript☆204Sep 9, 2026Updated last month
- Software for estimating correlation of trait effect sizes across populations☆62May 30, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools to work with GWAS-VCF summary statistics files☆143Sep 3, 2026Updated last month
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆168Oct 22, 2025Updated last year
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago
- Gaussian imputation of GWAS summary statistics☆15Apr 16, 2015Updated 11 years ago
- Documentation on new GWAS Summary Statistics Standard☆25Jun 26, 2026Updated 4 months ago
- PrediXcan Project☆121Oct 17, 2022Updated 4 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- A rapido and lightweight method for PGS computation☆14Aug 20, 2026Updated 2 months ago
- GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;☆22Dec 31, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆40Jun 15, 2023Updated 3 years ago
- High-definition likelihood inference of genetic correlations (HDL)☆144Sep 13, 2026Updated last month
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆147Jul 26, 2022Updated 4 years ago
- Code for the in-dev PrediXcan Project☆28Oct 17, 2022Updated 4 years ago
- PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a c…☆529Updated this week
- Specification for the GWAS-VCF format (manuscript in preparation)☆27Aug 3, 2021Updated 5 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆35Sep 27, 2026Updated last month