bvilhjal / ldpred

Related projects ⓘ

Alternatives and complementary repositories for ldpred

• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆75Updated 2 years ago
• weizhouUMICH / SAIGE
  ☆191Updated 2 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆61Updated this week
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆69Updated 6 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆42Updated 5 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆47Updated last month
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆93Updated 3 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆42Updated last year
• PMBio / peer
  A factor analysis package
  ☆95Updated 12 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated 10 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆107Updated 2 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆96Updated 6 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆40Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆68Updated 5 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆56Updated last year
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆48Updated 5 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆150Updated this week
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆68Updated 2 weeks ago
• cumc / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆41Updated last week
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆55Updated last month
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆73Updated 11 months ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆39Updated 3 years ago
• weizhou0 / GATE
  ☆19Updated last year
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆134Updated 2 years ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆91Updated last week
• limix / limix
  Linear mixed model for genomic analyses.
  ☆103Updated 3 years ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆121Updated this week
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆55Updated 5 years ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆142Updated 4 years ago