Alternatives and similar repositories for PCAone:

Users that are interested in PCAone are comparing it to the libraries listed below

• Rosemeis / emu
  EM-PCA for Ultra-low Coverage Sequencing Data
  ☆18Updated 3 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆58Updated this week
• YaolingYang / SparsePainter
  SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap
  ☆12Updated last week
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆43Updated last month
• Zilong-Li / vcfppR
  The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
  ☆15Updated this week
• jaredgk / PPP
  Repository for pipeline code
  ☆25Updated last year
• hringbauer / hapROH
  Software to call ROHs
  ☆16Updated 3 weeks ago
• popgenmethods / pyrho
  Fast inference of fine-scale recombination rates based on fused-LASSO
  ☆50Updated last month
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• ANGSD / NgsRelate
  ☆43Updated last month
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• ikmb / eagleimp
  ☆25Updated last month
• hoffmangroup / umap
  ☆26Updated last month
• stschiff / GAworkshop
  Genome Analysis Workshop (Jena 2016) material
  ☆17Updated 8 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆29Updated 7 months ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆22Updated 10 years ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆42Updated 3 weeks ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆53Updated 9 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• tulerpetontidae / psmc-python
  A reimplementation of a classical PSMC method in python for educational purposes
  ☆15Updated 9 months ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆43Updated 5 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆28Updated 3 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆15Updated 2 years ago
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated 3 weeks ago
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 3 years ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 3 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 2 months ago
• medical-genomics-group / gmrm
  A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
  ☆9Updated last year