Fast calculations of linkage-disequilibrium in large-scale human cohorts
☆44Nov 9, 2019Updated 6 years ago
Alternatives and similar repositories for tomahawk
Users that are interested in tomahawk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated 11 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 3 months ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- ☆21Jan 11, 2024Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago
- Substring index for paths in a graph☆60Mar 17, 2026Updated last week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 5 months ago
- ☆21Nov 1, 2019Updated 6 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆145Jul 26, 2022Updated 3 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 6 years ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 5 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- ☆17Dec 2, 2015Updated 10 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- ☆11Aug 2, 2025Updated 7 months ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago