explodecomputer / imputePipe

Related projects ⓘ

Alternatives and complementary repositories for imputePipe

• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 5 months ago
• gersteinlab / aloft
  ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…
  ☆19Updated 5 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆25Updated 8 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆14Updated 2 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆28Updated last year
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆21Updated last month
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 4 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆13Updated 9 months ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 2 years ago
• mcveanlab / TreeWAS
  ☆15Updated 7 years ago
• D-I-L / django-chicp
  ☆9Updated 8 years ago
• zhengxwen / SeqArray
  Data management of large-scale whole-genome sequence variant calls (Development version only)
  ☆44Updated last week
• awilfert / PSAP-pipeline
  ☆14Updated 7 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 3 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆28Updated 6 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated last year
• maxplanck-ie / rna-seq-qc
  Rna-seq pipeline, From FASTQ to differential expression analysis...
  ☆20Updated 7 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 7 years ago
• aehrc / TRIBES
  Finding cryptic relationships to boost disease gene detection
  ☆12Updated last year
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 4 years ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆31Updated 2 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 2 years ago
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 8 years ago
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆18Updated 3 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated last month
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆15Updated 8 months ago