explodecomputer / imputePipeLinks
Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting to plink format and filtering steps
☆14Updated 11 years ago
Alternatives and similar repositories for imputePipe
Users that are interested in imputePipe are comparing it to the libraries listed below
Sorting:
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- ☆16Updated 7 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Updated 2 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- PharmGKB NGS Pipeline☆17Updated 6 years ago
- ☆21Updated 2 months ago
- software package for integrative genetic association analysis☆34Updated last year
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- ☆14Updated 7 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- Sanity check Variant Call Format (VCF) files.☆37Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- ☆22Updated 8 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 5 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- Simulation of rare and common variants based on 1000 genomes data☆19Updated 3 years ago
- ☆10Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago