Alternatives and similar repositories for imputePipe:

Users that are interested in imputePipe are comparing it to the libraries listed below

• mcveanlab / TreeWAS
  ☆15Updated 7 years ago
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆16Updated 11 months ago
• cotsapaslab / jlim
  ☆10Updated 2 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 3 years ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆12Updated last year
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• gersteinlab / aloft
  ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…
  ☆19Updated 5 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• KeinanLab / xwas-3.0
  A Toolset for Chromosome X-Wide Association Studies
  ☆10Updated 6 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated last year
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆18Updated 3 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 7 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆28Updated 6 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• jmonlong / sQTLseekeR
  R package to detect splicing QTLs (sQTLs)
  ☆15Updated 4 years ago
• diptavo / MultiSKAT
  MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…
  ☆11Updated 5 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated last month
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆23Updated 2 weeks ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆33Updated 6 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 4 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• talkowski-lab / SV-Adjudicator
  ☆25Updated 6 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 5 years ago
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 3 years ago
• rthurman / hotspot
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
  ☆14Updated 10 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated last year
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 9 months ago