hmgu-itg / VCF-liftover

Related projects ⓘ

Alternatives and complementary repositories for VCF-liftover

• ywchoi / phasing
  Evaluation of phasing performance
  ☆21Updated 6 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated this week
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last week
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 2 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 3 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆31Updated 3 weeks ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆39Updated 2 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆44Updated 2 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆27Updated last month
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 2 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 4 months ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 5 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 10 months ago
• ikmb / eagleimp
  ☆21Updated last month
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆34Updated 2 months ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 4 months ago
• VanLoo-lab / CAMDAC
  ☆11Updated last month
• AndreasHeger / gat
  Genomic Association Tester
  ☆29Updated last year
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆11Updated 11 months ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆35Updated 8 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆27Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆26Updated 3 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆48Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago