Liftover VCF files
☆19Dec 10, 2016Updated 9 years ago
Alternatives and similar repositories for VCF-liftover
Users that are interested in VCF-liftover are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆20Mar 18, 2023Updated 3 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago
- mtDNA Variant Caller☆36Dec 23, 2024Updated last year
- Large scale ancestry inference from PCA data☆26May 2, 2023Updated 3 years ago
- Github for files currently published in the IPD-KIR FTP Directory hosted at the European Bioinformatics Institute☆13Dec 16, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 9 months ago
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- Genomics workflows for CPG using Hail Batch☆12Sep 8, 2026Updated last month
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆19Mar 7, 2026Updated 7 months ago
- Shiny app for geno-pheno catalog☆11Updated this week
- CADD-SV – a framework to score the effect of structural variants☆23Oct 22, 2026Updated 2 weeks ago
- Supporting code and materials for GATK gCNV publication☆12Jul 13, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆52May 12, 2026Updated 5 months ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- Code to build models that effectively predict promoter-driven gene expression☆13May 15, 2025Updated last year
- FakeSequence is an artificial non-functional realistic DNA sequence generator.☆10Feb 7, 2024Updated 2 years ago
- ☆11Updated this week
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆19Jul 15, 2022Updated 4 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated last year
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- A population genetics module written in Python☆12Dec 13, 2016Updated 9 years ago
- A Fine-Mapping pipeline☆23Sep 13, 2019Updated 7 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆91May 13, 2022Updated 4 years ago
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Updated this week
- PyPop: Python for Population Genomics☆25Updated this week
- ☆11Jul 21, 2021Updated 5 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆148Jul 26, 2022Updated 4 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago