hmgu-itg / VCF-liftover
Liftover VCF files
☆17Updated 8 years ago
Alternatives and similar repositories for VCF-liftover:
Users that are interested in VCF-liftover are comparing it to the libraries listed below
- Evaluation of phasing performance☆22Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆21Updated 2 months ago
- Fast and scalable variant annotation tool☆30Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- Structural variant merging tool☆49Updated 5 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆23Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Structural variant (SV) analysis tools☆35Updated 7 months ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago