Notes on SNP-related tools and genome variation analysis
☆28Aug 30, 2025Updated 6 months ago
Alternatives and similar repositories for SNP_notes
Users that are interested in SNP_notes are comparing it to the libraries listed below
Sorting:
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- ☆21Nov 15, 2024Updated last year
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆43Jul 27, 2023Updated 2 years ago
- Imputation-beagle-tutorial☆38Jun 2, 2022Updated 3 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 10 years ago
- A Python package with integrated lncRNA prediction methods☆12Feb 17, 2021Updated 5 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 4 months ago
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated last month
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Jul 28, 2025Updated 7 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆15Aug 16, 2024Updated last year
- ☆17Nov 26, 2023Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆29Aug 15, 2024Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆19Apr 23, 2025Updated 10 months ago
- [知识管理]A simple yet powerful blog system for reading and organizing txt/Markdown/html files, based on PHP. 订阅/关注请点顶部的 Watch，收藏/点赞请点顶部的Sta…☆17Feb 24, 2026Updated last week
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 6 months ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated last month
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 5 months ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- 群体遗传学分析中用到的script和skill等☆24Jul 6, 2024Updated last year