mdozmorov / SNP_notesLinks
Notes on SNP-related tools and genome variation analysis
☆28Updated last week
Alternatives and similar repositories for SNP_notes
Users that are interested in SNP_notes are comparing it to the libraries listed below
Sorting:
- Structural variant merging tool☆53Updated last year
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆25Updated 3 years ago
- The cattle Genotype-Tissue Expression atlas v1☆27Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- ☆15Updated 3 years ago
- tutorial on pggb☆35Updated 7 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆33Updated 2 months ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- ☆36Updated 2 years ago
- Scripts to convert between file formats for various analyses☆17Updated 3 months ago
- ☆19Updated last year
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ☆27Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- MEGAnE☆31Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- ☆18Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆21Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- lncRNA-screen☆25Updated 8 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 4 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago