Alternatives and similar repositories for SNP_notes

Users that are interested in SNP_notes are comparing it to the libraries listed below

• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆52Updated 10 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated last month
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆40Updated 3 weeks ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆46Updated 3 months ago
• fansalon / TEspeX
  TEspeX - pipeline for Transposable Elements expression quantification
  ☆21Updated last year
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆28Updated 2 months ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• njaupan / ecc_finder
  a tool to detect eccDNA using Illumina and ONT sequencing
  ☆16Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated 2 weeks ago
• Shians / NanoMethViz
  ☆28Updated last month
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆43Updated 3 weeks ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆16Updated 9 months ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• talkowski-lab / gnomad-sv-pipeline
  Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)
  ☆36Updated 5 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆34Updated 2 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆34Updated 5 months ago
• WeiWei060512 / NUMTs-detection
  Detecting NUMTs from WGS
  ☆12Updated last year
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 5 years ago
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆19Updated last year
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆48Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 3 months ago
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆46Updated 4 years ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆21Updated last week
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated 3 weeks ago