gaberoo / FragGeneScan
☆16Updated 2 years ago
Alternatives and similar repositories for FragGeneScan:
Users that are interested in FragGeneScan are comparing it to the libraries listed below
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last month
- Prophage Activity Estimator☆26Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Improving genome bins through the combination of different binning programs☆31Updated 2 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 7 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 4 months ago
- Unified Human Gut Virome Catalog☆27Updated 6 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- ☆44Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- ☆31Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ☆26Updated this week
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆19Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆13Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated this week
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆28Updated last year