☆16Aug 1, 2022Updated 3 years ago
Alternatives and similar repositories for FragGeneScan
Users that are interested in FragGeneScan are comparing it to the libraries listed below
Sorting:
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Feb 3, 2026Updated 3 weeks ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Feb 17, 2025Updated last year
- ☆15May 22, 2025Updated 9 months ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 6 years ago
- ☆19Dec 4, 2025Updated 2 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Predict protein thermostability with ML☆20Aug 20, 2024Updated last year
- A script for comparing old vs new versions of genome annotations☆21Aug 1, 2023Updated 2 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆51Jul 11, 2024Updated last year
- ☆19Feb 5, 2026Updated 3 weeks ago
- Multiple sequence aligner for protein and DNA/RNA.☆22Jan 3, 2018Updated 8 years ago
- A deep learning approach to de novo variant calling in next generation sequencing data☆21Feb 20, 2026Updated last week
- Phyling: phylogenetic inference from annotated genomes☆30Jan 30, 2026Updated last month
- metabolic heatmap☆22May 12, 2019Updated 6 years ago
- Plasmid exploration of bacterial genomes☆23Mar 2, 2022Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 weeks ago
- Fast and accurate protein structure prediction☆57Jan 17, 2025Updated last year
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Jan 8, 2026Updated last month
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- Bacterial Annotation by Learned Representation of Genes☆59Jan 22, 2021Updated 5 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- Pair-End AssembeR☆34Apr 16, 2014Updated 11 years ago
- ☆63Feb 27, 2024Updated 2 years ago
- Clustering cONtigs with COverage and ComposiTion☆137Mar 6, 2020Updated 5 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Aug 26, 2024Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 6 months ago