Alternatives and similar repositories for clustal-omega

Users that are interested in clustal-omega are comparing it to the libraries listed below

• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆20Updated 2 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated 3 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆24Updated 6 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 weeks ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆21Updated last year
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆36Updated 9 months ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆58Updated 2 weeks ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆20Updated last week
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆25Updated 3 weeks ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• Chokyotager / ORFFinder
  ORFFinder in Python
  ☆16Updated 9 months ago
• dansondergaard / tmhmm.py
  A transmembrane helix finder in Python 3.
  ☆37Updated last year
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 2 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆32Updated 8 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆25Updated last month
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆22Updated 2 years ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆29Updated last year
• mdmparis / defense-finder-models
  MacSyFinder models allowing for a systematic search of anti-phage systems
  ☆23Updated 4 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆61Updated 6 months ago
• soedinglab / MMseqs
  ☆14Updated 8 years ago
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆24Updated 8 months ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆18Updated 2 months ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆21Updated 3 months ago
• alvesrco / pipecov
  This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …
  ☆14Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 2 years ago
• FlyPythons / KEGGTools
  A collection of tools to download and process KEGG database
  ☆37Updated 7 years ago