ehsanasgari / MicroPhenoLinks
MicroPheno Project
☆12Updated 3 years ago
Alternatives and similar repositories for MicroPheno
Users that are interested in MicroPheno are comparing it to the libraries listed below
Sorting:
- AMBER: Assessment of Metagenome BinnERs☆31Updated 9 months ago
- ☆33Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Updated 6 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆66Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 6 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 3 weeks ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 3 weeks ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- A package to annotate protein sequences☆60Updated 8 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago