ehsanasgari / MicroPheno
MicroPheno Project
☆13Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for MicroPheno
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Updated last year
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 4 months ago
- ☆16Updated 8 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Find Unique genomic Regions☆29Updated this week
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆9Updated 4 months ago
- ☆25Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Factorize metagenotypes to infer strains and their abundances☆11Updated last month
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 weeks ago
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- ☆23Updated last year
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- ☆23Updated 5 years ago
- Locus and lineage tests for bacterial GWAS☆30Updated 7 years ago
- An RNA virus strain-level identification tool for short reads.☆20Updated 5 months ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago