ehsanasgari / MicroPheno
MicroPheno Project
☆13Updated 2 years ago
Alternatives and similar repositories for MicroPheno:
Users that are interested in MicroPheno are comparing it to the libraries listed below
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Find Unique genomic Regions☆29Updated this week
- ☆16Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆23Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 4 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Updated 9 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 4 months ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- StrainFinder☆26Updated 6 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Metagenomics microbial abundance quantification☆27Updated 2 years ago
- shotgun pipeline☆12Updated 6 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 9 months ago
- An RNA virus strain-level identification tool for short reads.☆21Updated 10 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 months ago
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 2 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago