Alternatives and similar repositories for tidytree:

Users that are interested in tidytree are comparing it to the libraries listed below

• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆92Updated 2 weeks ago
• gmbecker / genbankr
  ☆19Updated last year
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆34Updated 2 months ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆65Updated 3 weeks ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆45Updated last week
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated this week
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 2 weeks ago
• YuLab-SMU / treedataverse
  Meta package for processing and visualizing tree with data
  ☆27Updated 3 years ago
• statdivlab / tinyvamp
  ☆19Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 2 weeks ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆70Updated 11 months ago
• SchlossLab / mikropml
  User-Friendly R Package for Supervised Machine Learning Pipelines
  ☆58Updated 2 months ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆24Updated 9 months ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆73Updated last year
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆53Updated last month
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆19Updated 7 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• microbiome / mia
  Microbiome analysis
  ☆51Updated last week
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 3 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆50Updated last month
• Bioconductor / Biostrings
  Efficient manipulation of biological strings
  ☆63Updated 2 weeks ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 5 years ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆28Updated 5 years ago
• fmichonneau / phylobase
  An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
  ☆19Updated last year