YuLab-SMU / tidytreeLinks
A Tidy Tool for Phylogenetic Tree Data Manipulation
☆56Updated 11 months ago
Alternatives and similar repositories for tidytree
Users that are interested in tidytree are comparing it to the libraries listed below
Sorting:
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆94Updated 2 months ago
- ☆20Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Analysis of Phylogenetics and Evolution☆70Updated 3 weeks ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆34Updated 4 months ago
- babette is an R package to work with BEAST2☆46Updated 2 weeks ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 11 months ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated 2 weeks ago
- STAMPS 2018 course☆16Updated 6 years ago
- ☆19Updated last year
- An interactive web application for demonstrating and using phyloseq.☆60Updated 5 years ago
- Meta package for processing and visualizing tree with data☆28Updated 3 years ago
- Microbiome analysis☆51Updated last week
- R interface to 'Gos'☆39Updated 2 years ago
- Simple R utilities for working with HMMER☆20Updated 8 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- Species richness with high diversity☆68Updated 2 months ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆71Updated 3 weeks ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Easy to define segments in y-axis for 'ggplot2'.☆28Updated 5 years ago
- Calculate distances between phylogenetic trees in R☆33Updated last month
- Efficient manipulation of biological strings☆64Updated this week
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- ggplots for nested data☆10Updated 11 months ago