A Tidy Tool for Phylogenetic Tree Data Manipulation
☆61Jul 2, 2026Updated 3 months ago
Alternatives and similar repositories for tidytree
Users that are interested in tidytree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 11 years ago
- Visualization and annotation of phylogenetic trees☆935Sep 14, 2026Updated 3 weeks ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 13 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated 5 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆20Jan 30, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualization of Viral Genetic Reassortment☆21Aug 29, 2026Updated last month
- ☆11Apr 17, 2023Updated 3 years ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 3 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 12 years ago
- rhierbaps: R implementation of hierBAPS☆36Feb 23, 2026Updated 7 months ago
- Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package☆115Sep 11, 2026Updated 3 weeks ago
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- download files in R using wget -c☆16Aug 20, 2025Updated last year
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- An automated assembly pipeline for microbial genomes☆19Aug 26, 2026Updated last month
- Decorate a plot with associated information☆131Updated this week
- A Full Featured Multiple Sequence Alignment Editor.☆28May 21, 2018Updated 8 years ago
- Visualizing publication-quality multiple sequence alignment using ggplot2☆220Sep 21, 2026Updated 2 weeks ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 15 years ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- useful functions for ggplot☆18Jul 2, 2026Updated 3 months ago
- Analysis for BICCN cross-species primary motor cortex project☆24Feb 13, 2024Updated 2 years ago
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Phylogenetic Likelihood Library 2 - experimental☆12May 12, 2025Updated last year
- R for Mass Spectrometry documentation☆15Sep 24, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- A grammar of graphics for comparative genomics☆790Updated this week
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 5 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆15Dec 8, 2025Updated 10 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Mar 20, 2026Updated 6 months ago
- star layer for ggplot2☆106May 20, 2026Updated 4 months ago
- Gotree: a set of command line tools and an API to manipulate phylogenetic trees.☆153Aug 20, 2026Updated last month