Alternatives and similar repositories for tidytree

Users that are interested in tidytree are comparing it to the libraries listed below

• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆30Updated 2 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆26Updated last week
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆103Updated 5 months ago
• gmbecker / genbankr
  ☆21Updated last year
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆74Updated 2 years ago
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 4 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆93Updated 3 weeks ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆27Updated 6 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last month
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆72Updated 4 months ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆39Updated 6 years ago
• YuLab-SMU / treedataverse
  Meta package for processing and visualizing tree with data
  ☆29Updated 3 years ago
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 2 months ago
• Bioconductor / Biostrings
  Efficient manipulation of biological strings
  ☆65Updated 3 months ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated last week
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆25Updated 2 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated 3 weeks ago
• statdivlab / tinyvamp
  ☆19Updated 2 years ago
• fawda123 / ggord
  a take on ordination plots using ggplot2
  ☆65Updated last year
• shaunpwilkinson / aphid
  Analysis with Profile Hidden Markov Models
  ☆22Updated last year
• SchlossLab / mikropml
  User-Friendly R Package for Supervised Machine Learning Pipelines
  ☆59Updated last month
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated last month
• YuLab-SMU / ggtreeDendro
  Drawing 'dendrogram' using 'ggtree'
  ☆13Updated 5 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 2 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• KarstensLab / microshades
  This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…
  ☆68Updated last year